Table 2 Significant marker trait associations at Bonferroni corrected p value for the traits under study.

From: Role of functional genes for seed vigor related traits through genome-wide association mapping in finger millet (Eleusine coracana L. Gaertn.)

Trait

SNP

Chromosome

Position in Mb

p-value

− log 10 (p)

Phenotypic variation (%)

GAA

FM_SNP_7145

5B

32,999,560

8.82E − 07

6.05

22.67

FM_SNP_11315

6B

30,575

3.86E − 08

7.41

15.15

FM_SNP_9478

7B

1,080,853

8.22E − 11

10.09

31.52

GAAR

FM_SNP_6470

1A

668,205

1.63E − 06

5.79

11.98

FM_SNP_11625

1B

11,964

1.73E − 06

5.76

0.00

FM_SNP_235

2A

38,938,071

2.31E − 11

10.64

28.36

FM_SNP_7145

5B

32,999,560

1.91E − 08

7.72

9.89

FM_SNP_11315

6B

30,575

8.14E − 08

7.09

7.54

FM_SNP_9478

7B

1,080,853

1.28E − 12

11.89

18.63

GIAA

FM_SNP_2264

5A

27,231,761

4.02E − 06

5.40

1.85

FM_SNP_6154

6A

207,418

1.89E − 06

5.72

5.62

FM_SNP_2840

6A

20,847,996

5.91E − 10

9.23

9.37

FM_SNP_9478

7B

1,080,853

4.55E − 14

13.34

19.19

FM_SNP_9582

7B

10,634,575

2.09E − 08

7.68

11.81

FM_SNP_3796

8A

7,586,758

5.92E − 08

7.23

31.12

FM_SNP_3881

8A

15,833,488

3.42E − 06

5.47

6.80

GIAAR

FM_SNP_5702

4A

3,356,110

3.31E − 06

5.48

10.89

FM_SNP_2924

6A

23,598,651

1.27E − 06

5.90

11.73

FM_SNP_9478

7B

1,080,853

8.26E − 09

8.08

22.89

FM_SNP_9582

7B

10,634,575

1.24E − 08

7.91

26.17

GRIC

FM_SNP_3303

6A

9,454,670

4.09E − 08

7.39

46.07

MGTAAR

FM_SNP_9852

5B

8,112,268

7.89E − 09

8.10

32.17

FM_SNP_5038

7A

2,646,898

1.42E − 06

5.85

12.51

MGTC

FM_SNP_3303

6A

9,454,670

5.26E − 10

9.28

31.86

FM_SNP_10858

6B

5,311,285

1.04E − 06

5.98

30.14

FM_SNP_8722

9B

22,998,937

1.82E − 07

6.74

12.03

RLC

FM_SNP_8168

7B

7,235,627

4.17E − 08

7.38

27.08

FM_SNP_3851

8A

14,068,683

4.20E − 12

11.38

39.58

SDWAA

FM_SNP_9403

1B

8,345,332

1.11E − 09

8.95

17.99

FM_SNP_4948

3A

13,227,356

2.13E − 09

8.67

37.48

FM_SNP_483

5A

8,063,998

9.69E − 07

6.01

30.75

SDWAAR

FM_SNP_1517

1A

7,662,529

1.34E − 11

10.87

70.19

FM_SNP_51

2A

1,436,477

6.34E − 08

7.20

10.65

FM_SNP_235

2A

38,938,071

1.30E − 06

5.89

9.69

FM_SNP_5327

7A

12,333,158

3.30E − 06

5.48

2.42

SDWC

FM_SNP_9403

1B

8,345,332

4.58E − 09

8.34

19.79

FM_SNP_90

2A

2,740,498

2.98E − 07

6.53

2.65

FM_SNP_1401

2A

27,797,564

1.65E − 07

6.78

14.00

FM_SNP_222

2A

35,377,666

1.14E − 09

8.94

21.33

FM_SNP_11328

5B

32,030

8.68E − 07

6.06

3.99

FM_SNP_10872

6B

5,968,386

6.90E − 16

15.16

21.56

FM_SNP_9158

9B

18,498,572

3.02E − 10

9.52

5.86

FM_SNP_10653

Scaffold19

539,087

2.61E − 07

6.58

0.80

SLC

FM_SNP_3696

3A

1,300,593

3.14E − 08

7.50

32.48

SVI1C

FM_SNP_6503

1A

2,095,281

2.55E − 06

5.59

34.31

FM_SNP_3696

3A

1,300,593

1.25E − 06

5.90

9.07

FM_SNP_3851

8A

14,068,683

1.13E − 10

9.95

25.99

SVI2C

FM_SNP_9403

1B

8,345,332

9.76E − 12

11.01

41.94

FM_SNP_2799

6B

6,676,029

9.31E − 07

6.03

7.67

FM_SNP_8521

9B

15,131,410

2.73E − 06

5.56

23.58

SVI2AAR

FM_SNP_7713

1B

32,103,423

4.02E − 06

5.40

9.40

FM_SNP_1366

2A

25,092,143

4.09E − 06

5.39

6.29

FM_SNP_235

2A

38,938,071

2.15E − 08

7.67

46.17

FM_SNP_9246

6B

4,504,876

3.22E − 08

7.49

10.97

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