Table 3 Nucleotide polymorphisms determined in a whole genome of an ASFV-G-∆MGF vaccine-like variant (VN/sows_32005/23) compared to a high-virulent Georgia 2007/1 isolate and masterseed strain.
Position* | Gene | Georgia 2007/1 (FR682468) | MasterSeed (PP529961) | VN/sows_32005/23 (PQ629526) | Effect** |
---|---|---|---|---|---|
1363 | 5ʹ UTR | – | A | A | No effect |
1384 | Non-coding | – | CC | CC | No effect |
11,839 | MGF110-8 L | C | C | T | Val â—Š Met |
14,228 | MGF110-1 L–MGF110-14 L fusion (Poly C region) | CCC | CC- | – | Delete 1 aa |
15,666 | MGF110-13Lb (Poly C region) | C | – | – | Reading frame shift |
17,624 | Non-coding | – | GG | G- | No effect |
17,838 | Non-coding | – | G | G | No effect |
19,793 | Non-coding | G | – | – | No effect |
20,009 | ASFV G ACD 00350 (Poly G region) | (G)16 | (G)15 | (G)10 | Delete 2 aa |
21,797 | Non-coding | – | GG | G- | No effect |
27,420 | Non-coding | T | – | – | No effect |
36,932 | MGF505-4R | T | T | C | Silent mutation |
36,938 | T | T | C | ||
74,823 | EP402R | – | – | AATAT | Reading frame shift |
81,759 | M448R | T | C | T | His â—Š Tyr*** |
98,396 | B438L | A | G | G | Silent mutation |
98,589 | B169L | A | A | G | Silent mutation |
145,579 | D205R | G | G | A | Gly â—Š Arg |
145,583 | G | G | A | Gly â—Š Asp | |
167,189 | E199L | C | G | G | Ala â—Š Pro |
170,454 | Non-coding | TG | – | TG | No effect |
185,175 | DP71L | C | C | A | Val â—Š Leu |