Table 1 Populations, samples size (N), references and GenBank accession numbers for original sequence data

From: Genetic history of some western Mediterranean human isolates through mtDNA HVR1 polymorphisms

Populations

N

Reference

GenBank accession number

Corsicans–Sardinians

Centre Corsica (Corte area)

47

Varesi et al. (2000)

 

Trexenta (South-Sardinia)

47

Present studya

DQ081669–DQ081715

Sant’ Antioco island (South-Sardinia)

42

Present studya

DQ081522–DQ081563

Northern Sardinia (Gallura province)

50

Present studya

DQ081420–DQ081469

Central Sardinia (Nuoro province)

52

Present studya

DQ067827–DQ067877

San Pietro island (South-Sardinia)

44

Present studya

DQ081564–DQ081607

Southern Corsica (Bonifacio area)

53

Present studya

DQ081367–DQ081419

Iberians

Galice

92

Salas et al. (1998)

 

Basques

45

Bertranpetit et al. (1995)

 

Andalusia (Granada province)

66

Present studya

DQ081234–DQ081299

Balearic Islands (Majorca)

67

Present studya

DQ081300–DQ081366

Catalunia

46

Côrte-Real et al. (1996)

 

Continental Italians

Sicily (Alia area)

49

Vona et al. (2001)

 

Northern Italy (Adige area)

67

Stenico et al. (1996)

 

Tuscany (Etruscan area)

113

Francalacci et al. (1996) (N=52); present studya (N=61)

DQ081608–DQ081668

North Africans

Egypt

83

Krings et al. (1999)

 

Moroccan Berbers

59

Rando et al. (1998)

 

Algeria

85

Côrte-Real et al. (1996)

 

Morocco (Marrakech province)

52

Present studya

DQ081470–DQ081521

Tunisian Berbers

155

Fadhloui-Zid et al. (2004)

 

Tunisia

47

Plaza et al. (2003)

 

Middle East

Middle East

42

Di Rienzo and Wilson (1991)

 

Turkey (Anatolia)

74

Comas et al. (1996)

 
  1. aBlood samples came from people originating, for three generations, from ten precise Mediterranean areas. Appropriate informed consent and information about birthplace, parents and grandparents was obtained from all participants. Genomic DNA was extracted using standard procedures, or a QIAmp Blood Kit (Qiagen, Courtaboef, France). The mitochondrial DNA (mtDNA) hypervariable 1 (HVR1) zone was amplified by polymerase chain reaction (PCR) using the following primers: L15996 (5′-CTCCACCATTAGCACCCAAAGC-3′) and H16401 (5′-TGATTTCACGGAGGATGGTG-3′), generating a 445-bp amplified fragment (Perkin-Elmer DNA Thermal Cycler 9700). PCR products were visualized on a 2% agarose gel with ethidium bromide and Smart Ladder SF marker (Eurogentec, Herstal, Belgium). PCR products were purified using a QIAquick gel extraction kit (Qiagen). Double-stranded sequencing of the purified PCR products was performed using an Applied Biosystems Sequencer (ABI 3700 Perkin-Elmer). Each sample was sequenced with primers H and L (used for the PCR). The sequences obtained cover 360 bases, from L16023 to L16382 of the reference sequence (Anderson et al. 1981). Sequences were aligned using the program CLUSTAL W (http://www.infobiogen.fr/)