Abstract
The pleckstrin homology (PH) ___domain is a conserved module present in many signal transducing and cytoskeletal proteins. Here we report the 2.8 Å crystal structure of the PH ___domain from dynamin. This ___domain consists of seven β-strands forming two roughly orthogonal antiparallel β-sheets terminating with an amphipathic α-helix. The structure also reveals a non-covalent dimeric association of the PH ___domain and a hydrophobic pocket surrounded by a charged rim. The dynamin PH ___domain structure is discussed in relation to its potential role in mediating interactions between proteins.
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References
Mayer, B.J., Ren, B.J., Clark, K.L. & Baltimore, D. A putative modular ___domain present in diverse signaling proteins. Cell 73, 629–630(1993).
Haslam, R.J., Koide, H.B. & Hemmings, B.A. Pleckstrin ___domain homology. Nature 363, 309–310 (1993).
Musacchio, A., Gibson, T., Rise, P., Thompson, J. & Saraste, M. The PH ___domain - a common piece in the structural patchwork of signaling proteins. Trends biochem. Sci., 343–348 (1993).
Shaw, G. Identification of novel pleckstrin homology (PH) domains provides a hypothesis for PH ___domain function. Biochem. biophys. Res. Commun. 195, 1145–1151 (1993).
Koch, W.J., Inglese, J., Stone, W.C. & Lefkowitz, R.J. The binding site for the β,γ-subunits of heterotrimetic G-proteins on the β-adrenergic-receptor kinase. J. biol. Chem. 268, 8256–8260 (1993).
Touhara, K., Inglese, J., Pitcher, J.A., Shaw, G. & Lefkowitz, R.J. Binding of G-protein β,γ-subunits to pleckstrin homology domains. J. biol. Chem. 269, 10217–10220 (1993).
Davis, L.H. & Bennett, V. Identification of 2 regions of β-spectrin that bind to distinct sites in brain membranes. J. biol. Chem. 269, 4409–4416 (1994).
Yoon, H.S., Hajduk, P.J., Petros, A.M., Olejniczak, E.T., Meadows, R.P. & Fesik, S.W. Solution structure of a pleckstrin-homology ___domain. Nature 369, 672–675 (1994).
Macias, M.J., Musacchio, A., Ponstingl, H., Nilges, M., Saraste, M. & Oschkinat, H. Structure of the pleckstrin homology ___domain from β- spectrin. Nature 369, 675–677 (1994).
van der Bliek, A.M., Redelmeier, T.E., Damke, H., Tisdale, E.J., Meyerowitz, E.M. & Schmid, S.L. Mutations in human dynamin block an intermediate stage in coated vesicle formation. J. cell Biol. 122, 553–563 (1993).
Herskovits, J.S., Burgess, C.C., Obar, R.A. & Vallee, R.B., Effects of mutant rat dynamin on endocytosis. J. cell Biol. 122, 565–578 (1993).
Shpetner, H.S. & Valle, R.B. Dynamin is a GTPase stimulated to high levels of activity by microtubules. Nature 355, 733–735 (1992).
Ando, A. et al. A complex of Grb2 dynamin binds to tyrosine phosphorylated insulin-receptor substrate-after insulin-treatment. EMBO J. 13, 3033–3038 (1994).
Gout, I. et al. The GTPase dynamin binds to and is activated by a subset of SH3 domains. Cell 75, 25–36 (1993).
Thomas, I.D., Sideras, P., Smith, C.I.E., Vorechovsky, I., Chapman, V. & Paul, W.E. Colocalization of X-linked agammaglobulinemia and X-linked immunodeficiency genes. Science 261, 355–358 (1993).
Rawlings, D.I. et al. Mutation of a unique region of Brutons tyrosine kinase in immunodeficient xid mice. Science 261, 358–361 (1993).
Blundell, T.L. & Johnson, L.N. in Protein crystallography (Academic, London; 1976).
Cowan, S.W., Newcomer, M.E. & Jones, T.A. Crystallographic refinement of human serum retinol binding-protein at 2Å resolution. Proteins. 8, 44–61 (1990).
Sali, A. & Blundell, T.L. The definition of topological equivalence in homologous and analogous structures: a procedure involving a comparison of local properties and relationships. J. molec. Biol. 212, 403–442 (1990).
Harlan, J.E., Hajduk, P.J., Yoon, H.S. & Fesik, S.W. Pleckstrin homology domains bind to phosphatidylinositol -4,5 - bisphosphate. Nature. 371, 168–170 (1994).
Pawson, T. & Schlessinger, J. SH2 and SH3 domains. Current Biol. 3, 434–441 (1993).
Simonds, W.F., Manji, H.K., Garritsen, A., Lupas, A.N. G-proteins and bark - a new twist for the coiled-coil. Trends biochem. Sci. 18, 315–317 (1993).
Ellis, M.V., Carne, A. & Katan, M. Structural requirements of phosphatidylinositol-specific phospholipase-cδ for enzyme activity. Eur J. Biochem. 213, 339–347 (1993).
Leslie, A.G.W. in Crystallographic Computing (Oxford Univ. Press; 1990).
CCP4 Collaborative Computing Project 4 (Daresbury Lab Warrington, UK; 1992).
Jones, T.A., Zou, J.-Y., Cowan, S.W. & Kjeldgaard, M. Improved methods for building protein models in electron density maps and the ___location of errors in these models. Acta crystallogr. A47, 110–119 (1991).
Driessen, H., Haneef, M.I.J., Harris, G.W., Howlin, B., Khan, G. & Moss, D.S. Restrain: restrained structure-factor least-squares refinement program for macromolecular structures. J. appl. Crystallogr. 22, 510–516 (1989).
Brunger, A.T. X-PLOR Version 3.1 Manual (Yale Univ. Press, New Haven; 1992).
Evans, S.V. SETOR: hardware-lighted three-dimensional solid model representations of marcomolecules. J. molec. Graphics 11, 134–138 (1993).
Hutchinson, E.G. & Thornton, J.M. Hera - a program to draw schematic diagrams of protein secondary structures. Proteins 8, 203–212 (1990).
Kabsch, W. & Sander, C. Dictionary of protein secondary structure. Pattern recognition of hydrogen bonded and geometrical features. Biopolymers 22, 2577–2637 (1983).
Overington, J.R., Johnson, M.S., Sali, A. & BIundell, T.L. Tertiary structural constraints on protein evolutionary diversity: templates, key residues and structure prediction. Proc. Royal Soc. B241, 132–145 (1990).
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Timm, D., Salim, K., Gout, I. et al. Crystal structure of the pleckstrin homology ___domain from dynamin. Nat Struct Mol Biol 1, 782–788 (1994). https://doi.org/10.1038/nsb1194-782
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DOI: https://doi.org/10.1038/nsb1194-782
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