Table 1 Discovery and replication analyses results for the novel pleiotropic locus.
Dual-trait analysis | ||||||||
|---|---|---|---|---|---|---|---|---|
Trait 1 | Trait 2 | Chr | Position | RA | EA | MAF | P | Correlation |
LD | MT GH | 1 | 3895353 | C | T | 0.20 | 6.3 × 10−9 | −0.39 |
0W | MT GH | 1 | 3896072 | G | T | 0.20 | 8.4 × 10−9 | −0.58 |
2W | MT GH | 1 | 3906923 | T | C | 0.22 | 9.9 × 10−12 | −0.68 |
2W | RP GH | 1 | 3978064 | A | C | 0.27 | 1.3 × 10−8 | −0.17 |
4W | MT GH | 1 | 3906923 | T | C | 0.22 | 3.1 × 10−9 | −0.64 |
0W GH FT | MT GH | 1 | 3906923 | T | C | 0.22 | 1.8 × 10−8 | −0.36 |
FT GH | MT GH | 1 | 3896072 | G | T | 0.20 | 1.5 × 10−8 | −0.60 |
Single-trait analysis | Replication | ||||||||
|---|---|---|---|---|---|---|---|---|---|
Trait 1 | Trait 2 | FT 10 °C | FT 16 °C | ||||||
Effect | P | h2 | Effect | P | h2 | Effect | P | Effect | P |
33.5 | 5.6 × 10−6 | 0.22 | 2.42 | 6.0 × 10−4 | 0.07 | 2.40 | 9.99 × 10−3 | 4.52 | 8.60 × 10−4 |
17.3 | 1.6 × 10−4 | 0.17 | 2.59 | 2.1 × 10−4 | 0.09 | 2.40 | 9.99 × 10−3 | 4.52 | 8.60 × 10−4 |
15.3 | 2.3 × 10−5 | 0.24 | 2.47 | 3.7 × 10−5 | 0.10 | 2.52 | 5.65 × 10−3 | 4.44 | 7.87 × 10−4 |
19.7 | 6.8 × 10−7 | 0.26 | 2.65 | 1.6 × 10−3 | 0.06 | 1.87 | 3.60 × 10−2 | 2.82 | 3.22 × 10−2 |
11.6 | 1.7 × 10−3 | 0.16 | 2.47 | 3.7 × 10−5 | 0.10 | 2.52 | 5.65 × 10−3 | 4.44 | 7.87 × 10−4 |
25.8 | 3.8 × 10−5 | 0.21 | 2.47 | 3.7 × 10−5 | 0.10 | 2.52 | 5.65 × 10−3 | 4.44 | 7.87 × 10−4 |
14.9 | 1.8 × 10−3 | 0.11 | 2.59 | 2.1 × 10−4 | 0.09 | 2.40 | 9.99 × 10−3 | 4.52 | 8.60 × 10−4 |
