Fig. 5: Selective sweep at the GS5 locus in fonio.
From: Fonio millet genome unlocks African orphan crop diversity for agriculture in a changing climate
a Smoothed representation of nucleotide diversity (π) in D. exilis in a 100 kb window surrounding the ortholog of the rice GS5 gene. The green curve shows π around DeGS5-3A on chromosome 3A and the blue curve shows π around DeGS5-3B on chromosome 3B. The dashed vertical red lines represent the ___location of the GS5 genes. The nucleotide diversity was calculated in overlapping 100 bp windows every 25 bp. b Schematic representation of the annotated genes in the GS5 regions and the orthologous gene relationships between chromosomes 3A (green) and 3B (blue). UF protein of unknown function, E3 E3 ubiquitin ligase, SCP (GS5) serine carboxypeptidase (Dexi3A01G0012320), GAOX gibberellin 2-beta-dioxygenase, ECH golgi apparatus membrane protein. DeGS5-3A and DeGS5-3B are indicated in red. The numbers in blue above and below the GS5 orthologs show their respective expression in transcripts per million (TPM) in grain tissue. c Two grains of D. exilis (top) and D. longiflora (bottom).
