Table 1 Haplotype analysis of TaRD21A-2D in the test wheat accessions using the identified 12 SNPs/InDels

From: A papain-like cysteine protease-released small signal peptide confers wheat resistance to wheat yellow mosaic virus

Haplotype

SNP01

Indel01

Indel02

Indel03

Indel04

SNP02

Indel05

Indel06

SNP03

Indel07

Indel08

SNP04

IT value

Number of varieties

Hap1

G

+

-

+

-

A

+

-

G

+

+

C

3.22

366

Hap2

T

-

+

-

+

G

-

+

C

-

-

T

1.13

10

Hap3

T

-

+

-

+

A

+

-

G

-

-

T

1.85

4

Hap4

T

-

+

-

+

A

+

-

C

-

-

T

1.22

5

Hap5

T

-

+

-

+

G

+

-

C

-

-

T

2.03

5

 

Ala96Ser

Indel

Indel

Indel

Indel

Spelice

Frameshift

Frameshift

Glu387Asp

Indel

Indel

Arg442Cys

  
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