Fig. 3: Pan- and core-genome analyses of eight Hevea accessions.
From: Pan-genome and phylogenomic analyses highlight Hevea species delineation and rubber trait evolution
a Variation of gene families in the pan- and core-genomes along with an additional Hevea genome. b Compositions of the pan-genome and individual genomes. The histogram shows the number of gene families in the eight genomes with different frequencies. Pie shows the proportion of the gene family marked by each composition. c Presence and absence of information for pan gene families in the eight Hevea genomes. d Gene number of each composition in individual genomes. e Expression level of the genes in each composition represented by FPKM for three tissues, viz. latex, bark, and leaf. Statistical differences were analyzed by one-way ANOVA with Tukey’s HSD test, and are indicated by the lower-case letters. The bold line in the box shows the median, box edges represent the 25th and 75th percentiles, vertical lines represent the maximum and minimum data points within 1.5× interquartile range outside box edges, solid circles represent the outlier data. f Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses of core and dispensable gene families. Significance was tested by two tailed Fisher’s exact test method. Source data and p values are provided as a Source Data file.
