Fig. 2: Prediction performance of CoVFit.
From: A protein language model for exploring viral fitness landscapes
a Spearman’s correlation scores for predicted relative fitness values and mAb neutralization escape scores. Scores from five cross-validation folds are shown as dots, with the mean represented by a bar and the standard deviation by an error bar. The correlation for mAbs was calculated in each epitope group. b Scatter plot for fitness prediction, aggregating results from five-fold cross-validation. Dot denotes the result of a certain viral genotype in a specific country. Dot is colored by the Nextclade clade. The relative fitness value was scaled so that the 0.1 percentile and 99.9 percentile points fall between 0 and 1. A dashed line with a slope 1 and intercept 0 is shown. c Scatter plot inherited from (b) but colored by the emergence date of each genotype. Source data are provided as a Source Data file.
