Extended Data Fig. 2: Quantitative proteome analysis across rice tissues.

a, Heatmap showing Pairwise global Pearson’s correlation analysis of transcriptome for all rice tissues. Core, gene with TPM > 1. Non-core, gene with TPM < 1. b, Heatmap showing Pairwise global Pearson’s correlation analysis of proteome for all rice tissues. Core, gene with TPM > 1. Non-core, gene with TPM < 1. c, Heatmap showing pattern of expression of tissue-specific proteins. If TS score of a protein is greater than 4 in a tissue and is at least 1.5 higher than the protein’s TS scores in any other tissue, this protein is considered as tissue specific. d, Number of tissue-enriched and tissue-specific genes at the transcriptome level in rice. See Methods section for the definition of tissue-enriched and tissue-specific genes. e, KEGG analysis of a subset of proteins enriched in rice atypical photosynthetic tissues stem and spike neck. BH method was used for multiple hypothesis adjustment.