Extended Data Fig. 6: Quality control and clustering of single-nucleus data.
From: Organization of the human intestine at single-cell resolution

(a,b) Violin plots of TSS enrichment (a) and RNA counts/cell (b) for different samples included in the study. Samples are coloured by the ___location from which they were obtained. (c) UMAP projection of all snRNA cells coloured by ___location. (d) Dotplot representation of expression of immune marker genes by immune cell types. (e) UMAP projection of scRNA immune cells coloured by donor. (f) Dotplot representation of expression of stromal marker genes by stromal cell types. g) Sub-clustering of enteroendocrine cells from all regions of the intestine. h) Dotplot representation of the expression of subtype specific enteroendocrine and enterochromaffin marker genes in different enteroendocrine cell types in our datasets. I) Sub-clustering of specialized secretory cells coloured by sample.