Extended Data Fig. 3: Definition of functional centromeres (shaded in blue) in T. monococcum accessions TA299 (left column) and TA10622 (right column) from CENH3 ChIP-Seq data.
From: Einkorn genomics sheds light on history of the oldest domesticated wheat
Centromeric regions plus ~15 Mb of flanking regions are shown. The top graph of each panel shows the ratio of CENH3 ChIP-Seq reads divided by input control reads. ChIP-Seq and control reactions were performed in duplicates, which are shown in purple (Rep1) and orange (Rep2). The region of functional centromeres was determined based on epic2 ChIP-Seq peak call density and is indicated by a shaded area. The middle track below shows the positions of genes as vertical lines. The bottom graph shows the average transposable element (TE) content in 100 kb windows. Note that RLG_Cereba and RLG_Quinta retrotransposons are highly enriched in functional centromeres, while other TE families dominate outside of centromeres.
