Fig. 2: Allele frequencies of the causal polymorphisms for the Hd3a, COLD1, GW6a, TAC1 and Sd1 genes in different O. sativa and O. rufipogon groups.
From: Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice

The type of reference allele is indicated in blue, and the alternative one is indicated in red or green.