Fig. 2: Analysis of TEs in rye. | Nature Genetics

Fig. 2: Analysis of TEs in rye.

From: A high-quality genome assembly highlights rye genomic characteristics and agronomically important genes

Fig. 2

a, Genomic constituents in Weining rye (Sc) in comparison with those in Tu, Aet and Hv. Note that the six constituents, especially Gypsy, Copia and unclassified LTR TEs, were much more abundant in Weining rye than in Tu, Aet or Hv. b, The top 15 families of TEs in Weining rye and the percentages of these families in Weining rye, Tu, Aet and Hv. Three Gypsy LTR families, Daniela, Sumaya and Sumana, showed increased abundance in Weining rye relative to those in Tu, Aet and Hv. c, Temporal patterns of LTR-RT insertion bursts in Weining rye as compared to those in Tu, Aet and Hv. The number of intact LTR-RTs used for each species is given in parentheses. d, Insertion bursts of Gypsy and Copia elements in Weining rye. The numbers of intact elements used for this analysis are provided in parentheses.

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