Extended Data Fig. 2: Association between various genetic elements and SV breakpoints split by SV type. | Nature Genetics

Extended Data Fig. 2: Association between various genetic elements and SV breakpoints split by SV type.

From: Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae

Extended Data Fig. 2

The breakpoints of all SVs within every ‘best’ genome were matched to the corresponding gff annotation file. These were then compared to the genome wide proportion of events to calculate a per genome enrichment. This was done by getting the breakpoint-associated features (left: n = 1776 CDS, n = 5 centromere, n = 1743 LTR, n = 274 tRNA, n = 760 TY, n = 354 X_element and n = 498 Y_prime_element) and the closest element for intergenic breakpoints (right: n = 2041 CDS, n = 145 centromere, n = 1784 LTR, n = 1291 tRNA, n = 748 TY, n = 427 X_element and n = 278 Y_prime_element). The horizontal lines in the boxplots correspond to the median, the lower and upper hinges correspond to the first and third quartiles and the whiskers extend up to 1.5 times the interquartile range.

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