Extended Data Fig. 2: Potential assembly error (D10) and heterzygous sites (A01, A09, A12, D04 and D08) detected by Veritymap K-mer distance concordance test. | Nature Genetics

Extended Data Fig. 2: Potential assembly error (D10) and heterzygous sites (A01, A09, A12, D04 and D08) detected by Veritymap K-mer distance concordance test.

From: A telomere-to-telomere genome assembly of cotton provides insights into centromere evolution and short-season adaptation

Extended Data Fig. 2

Based on the k-mer discrepancies between HiFi reads and the assembly, if a significant proportion of reads (20-80%) deviate from the assembly at a specific ___location, a heterozygous site is suspected; if nearly all reads deviate (>80%), a potential assembly error is indicated.

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