Extended Data Fig. 6: Published human scRNA-seq PBMC dataset from the well-based Smart-seq3xpress protocol59. | Nature Methods

Extended Data Fig. 6: Published human scRNA-seq PBMC dataset from the well-based Smart-seq3xpress protocol59.

From: Unsupervised removal of systematic background noise from droplet-based single-cell experiments using CellBender

Extended Data Fig. 6

This dataset is extremely clean to begin with. The UMAP shows the expected cell types, nicely clustered. The two dotplots show expression of immune cell marker genes before and after CellBender. Some genes show improvement, but many look quite similar, as expected for a clean dataset. UMAP plots on the right show cleanup of a few genes after CellBender.

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