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Changing genes, cells and networks to reprogram the brain after stroke

Abstract

Important advances have been made in reperfusion therapies for acute ischemic stroke. However, a majority of patients are either ineligible for or do not respond to treatments and continue to have considerable functional deficits. Stroke results in a pathological disruption of the neurovascular unit (NVU) that involves blood–brain barrier leakage, glial activation, neuronal damage and chronic inflammation, all of which create a microenvironment that hinders recovery. Therefore, finding ways to promote central nervous system recovery remains the holy grail of stroke research. Here we propose a conceptual framework to synthesize recent progress in the field, which is currently dispersed and disconnected in the literature. We suggest that stroke recovery requires an integrated reprogramming process throughout the brain that occurs at multiple levels, including changes in gene expression, endogenous cellular transdifferentiation within the NVU, and reorganization of larger-scale neural and social networks.

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Fig. 1: Endogenous cellular reprogramming after stroke and strategies for tissue regeneration.
Fig. 2: Network reprogramming after stroke.
Fig. 3: Multilevel reprogramming of the brain after stroke.

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Acknowledgements

We thank S. Huang from Massachusetts General Hospital for providing the diffusion tensor image. We thank colleagues in Consortium International pour la Recherche Circadienne sur l’AVC for helpful discussions. This work was supported by the Leducq Foundation (Trans-Atlantic Network of Excellence on Circadian Effects in Stroke, grant 21CVD04).

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Li, W., George, P., Azadian, M.M. et al. Changing genes, cells and networks to reprogram the brain after stroke. Nat Neurosci 28, 1130–1145 (2025). https://doi.org/10.1038/s41593-025-01981-8

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