Table 3 Genome annotation of repetitive sequences and protein-coding genes.

From: Chromosome-level assemblies of cultivated water chestnut Trapa bicornis and its wild relative Trapa incisa

 

T. bicornis

T. incisa

Repetitive sequence

Total repeative sequence

62.88%

62.49%

Retroelements

39.50%

41.17%

LTR-Ty1/Copia

3.93%

2.65%

LTR-Gypsy/DIRS1

29.69%

32.06%

DNA transposons

4.55%

5.26%

Protein-coding gene

Gene number

33,306

33,315

Mean gene length (bp)

2,522.59

2,493.22

Mean CDS length (bp)

228.33

228.5

CDS number per mRNA

5.48

5.45

BUSCO

97.70%

98.10%

single-copy BUSCOs (%)

85.20%

85.00%

duplicated BUSCOs (%)

12.50%

13.10%

Functional annotation

SwissProt

31,172 (93.59%)

31,213 (93.69%)

NR

31,193 (93.66%)

31,229 (93.74%)

TrEMBL

25,037 (75.17%)

25,039 (75.16%)

KEGG

28,097 (84.36%)

28,126 (84.42%)

InterPro

30,959 (92.95%)

30,945 (92.89%)

GO

21,159 (63.53%)

21,138 (63.45%)

Total

31,360 (94.16%)

31,406 (94.27%)

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