Table 11 Statistics of the repetitive elements in O. rebecca genome.
From: Chromosome-level genome assembly and annotation of eel goby (Odontamblyopus rebecca)
RepBase TEs | TE Proteins | De novo | Combined TEs | |||||
|---|---|---|---|---|---|---|---|---|
Length (bp) | % in Genome | Length (bp) | % in Genome | Length (bp) | % in Genome | Length (bp) | % in Genome | |
DNA | 65,726,147 | 7.15 | 3,774,515 | 0.41 | 112,673,397 | 12.26 | 148,095,272 | 16.12 |
LINE | 52,907,281 | 5.76 | 26,294,877 | 2.86 | 54,090,128 | 5.89 | 78,000,619 | 8.49 |
SINE | 6,434,641 | 0.70 | 0 | 0.00 | 4,615,307 | 0.50 | 9,818,105 | 1.07 |
LTR | 19,340,283 | 2.10 | 4,605,625 | 0.50 | 49,248,145 | 5.36 | 61,974,924 | 6.75 |
Satellite | 6,746,526 | 0.73 | 0 | 0.00 | 3,690,319 | 0.40 | 10,355,504 | 1.13 |
Simple repeat | 0 | 0.00 | 0 | 0.00 | 828,885 | 0.09 | 828,885 | 0.09 |
Other | 22,121 | 0.00 | 0 | 0.00 | 0 | 0.00 | 22,121 | 0.00 |
Unknown | 750,022 | 0.08 | 0 | 0.00 | 164,925,150 | 17.95 | 165,656,526 | 18.03 |
Total | 140,547,735 | 15.30 | 34,669,414 | 3.77 | 380,331,288 | 41.39 | 449,207,484 | 48.89 |
