Table 1 Summary of the sequencing data generated for the looseleaf lettuce (L. sativa var. crispa cv. Green Elegance) genome assembly.
From: A near-complete chromosome-level genome assembly of looseleaf lettuce (Lactuca sativa var. crispa)
Library types | Type | Sample | Molecular | Platform | Insert size | Data size (Gb) | Coverage | Application |
|---|---|---|---|---|---|---|---|---|
Unmap/Short-Read | PE1 | Leaf | DNA | Illumina Novaseq 6000 | 350 bp | 124.16 Gb | 50.39× | Survey |
SMRTbell | CCS2 | Leaf | DNA | PacBio Sequel II | 17.26 Kb | 109.27 Gb | 46× | Assembly |
Hi-C | PE | Leaf | DNA | Illumine Novaseq 6000 | 300–700 bp | 251.37 Gb | 97× | Pseudo-chromosome construction |
Direct-cDNA | PE | Leaf | RNA | Illumina Novaseq 6000 | 350 bp | 11.92 Gb | 5× | Annotation |
Direct-cDNA | PE | Seedling | ||||||
Direct-cDNA | PE | Inflorescence | ||||||
ONT | Single | Leaf | DNA | PromethION | 100 Kb | 32.55 Gb | 13× | Gap filling |
