Table 4 Statistics of repetitive element annotation.
From: A near-complete chromosome-level genome assembly of looseleaf lettuce (Lactuca sativa var. crispa)
Type | Number of elements | Sequence length (bp) | Percent of genome (%) | |||
|---|---|---|---|---|---|---|
Transposable elements | Retroelement | LTR element | Copia | 388,930 | 529,508,339 | 20.44 |
ERV | 8,669 | 1,408,069 | 0.05 | |||
Gypsy | 584,022 | 733,625,108 | 28.32 | |||
Ngaro | 493 | 29,296 | 0 | |||
Pao | 921 | 518,697 | 0.02 | |||
Non-LTR elements | SINE | 4,634 | 558,319 | 0.02 | ||
LINE | 39,143 | 14,543,128 | 0.56 | |||
Retroelement total | 1,746,533 | 1,730,501,429 | 66.8 | |||
DNA transposon | 582,444 | 267,088,074 | 10.31 | |||
Total of retroelement and DNA transposon | 2,328,977 | 1,997,589,503 | 77.11 | |||
Tandem Repeats | Microsatellite (1–9 bp units) | 712,396 | 24,728,216 | 0.95 | ||
Minisatellite (10–99 bp units) | 615,963 | 61,419,180 | 2.37 | |||
Satellite (>= 100 bp units) | 41,600 | 21,223,020 | 0.82 | |||
Total | 1,369,959 | 107,370,416 | 4.14 | |||
