Table 2 Species-wise comparison of the nucleotide and amino acid divergence in the different gene regions and proteins of KFDV based on whole genome sequences (n = 48).

From: Phylogeography of Kyasanur Forest Disease virus in India (1957–2017) reveals evolution and spread in the Western Ghats region

Region

Within host divergence

Between host divergence

Monkey (M)

Tick (T)

Human (H)

M vs T

M vs H

T vs H

Gene

Protein

Gene

Protein

Gene

Protein

Gene

Protein

Gene

Protein

Gene

Protein

Genome

2.04

0.68

1.90

0.54

2.77

0.79

2.06

0.63

2.23

0.78

2.39

0.79

C

2.84

2.62

2.48

2.46

2.69

2.20

2.86

2.77

2.69

2.40

3.00

2.66

prM

1.81

1.02

1.66

0.86

2.29

1.64

1.81

0.97

2.12

1.53

2.31

1.51

E

2.50

0.38

2.36

0.30

2.58

0.52

2.54

0.34

2.60

0.51

2.48

0.53

NS1

1.84

0.88

1.77

0.69

2.24

0.86

1.87

0.78

2.16

0.99

2.29

0.95

NS2

2.26

1.02

2.02

0.69

2.55

1.46

2.25

0.87

2.40

1.31

2.54

1.20

NS3

1.73

0.43

1.75

0.46

2.02

0.55

1.83

0.46

1.93

0.53

2.19

0.61

NS4

2.09

0.59

1.75

0.22

2.34

0.70

2.01

0.43

2.30

0.63

2.34

0.51

NS5

1.93

0.55

1.79

0.43

2.11

0.52

1.93

0.52

2.11

0.54

2.22

0.59

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