Figure 6
From: Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice
Phylogenic analysis of TCD3 and its homologs (A); Protein sequences are from Sorghum bicolor (8080543), Zea mays (100285657), Setaria italic (101780537, Brachypodium distachyon (100846238), Arabidopsis thaliana (At2g39140), Glycine max (100808046), Vitis vinifera (100247893), Populus trichocarpa (POPTR_0008s03540g), and Selaginella moellendorffii (SELMODRAFT_45172). Scale represents percentage substitutions per site. The rooted tree is based on multiple sequence alignment using MAFFT and was generated with MEGA 6; Amino acid sequence alignment of TCD3 with its nine homologs (B). Fully and partially conserved amino acids are shaded in black and gray, respectively. The homologous comparison is based on multiple sequence alignment using MAFFT and was generated with the program DNAMAN8.
