Table 2 Genome assembly statistics for O. australiensis keep River.
Stage | Feature (unit) | Value |
|---|---|---|
Long reads | Post-QC bases (Gbp) | 49.2 |
Estimated coverage (x) | 51 | |
Expected genome size (Mbp) | 965 | |
Genome assembly (contigs) | Assembled genome size (Mbp) | 996 |
Long read coverage (x) | 38 | |
No. contigs | 1956 | |
Contig N50 (Mbp) | 1.9 | |
Contig L50 | 114 | |
Contig N90 (kbp) | 186.7 | |
Contig L90 | 799 | |
BUSCO score (100% = 4896) | 91.9 | |
Whole-genome LAI | 15.2 | |
Genome scaffolds | Scaffolded genome size (Mbp) | 860.9 |
Long read coverage (x) | 46 | |
Placed contigs | 693 | |
Unplaced contigs | 157 | |
Total length of placed contigs (including Ns; Mbp) | 812 | |
Total length of unplaced contigs (Mbp) | 46.9 | |
Gaps (Mbp) | 2.1 | |
BUSCO score (100% = 4896) | 97.5 | |
Whole-genome LAI score | 17.6 | |
LTR_Retriever (scaffolds) | LTR-RT content (Mbp) | 518.2 |
LTR-RT content (%) | 60.2 |
