Table 2 Non-AI scRNAseq clustering tools.

From: Analysis of cardiac single-cell RNA-sequencing data can be improved by the use of artificial-intelligence-based tools

Technique name

Version

Software platforms

# citations

Tutorial website

Seurat30

4.0

R

10,670

https://satijalab.org/seurat/articles/pbmc3k_tutorial.html

Scanpy75

 

Python

1579

https://scanpy-tutorials.readthedocs.io/en/latest/pbmc3k.html

RaceID98

3.0

R

1127

https://cran.r-project.org/web/packages/RaceID/vignettes/RaceID.html

SC399

 

R

743

http://bioconductor.org/packages/release/bioc/manuals/SC3/man/SC3.pdf

CIDR100

 

R

248

https://github.com/VCCRI/CIDR

scDHA35

 

R

 

https://github.com/duct317/scDHA

ssCCES37

 

R

 

https://github.com/gedcom/scCCESS

DCA36

 

Python

 

https://scanpy.readthedocs.io/en/stable/generated/scanpy.external.pp.dca.html

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