Table 1 Summary statistics for the assembly of seven CPGs in the genus Citrullus.
Genome features | C. ecirrhosus* | C. naudinianus* | C. rehmii* | C. lanatus subsp. vulgaris | C.colocynthis | C. amarus | C.mucosospermus | Average ± SD | variation coefficient |
|---|---|---|---|---|---|---|---|---|---|
Size (bp) | 157,009 | 156,926 | 157,071 | 156,906 | 157,147 | 157,008 | 156,907 | 157,005 ± 84 | 5.36E−4 |
LSC length (bp) | 86,823 | 86,728 | 86,887 | 86,845 | 86,852 | 86,813 | 86,846 | 86,845 ± 46 | 5.32E−4 |
SSC length (bp) | 17,890 | 17,908 | 17,886 | 17,897 | 17,999 | 17,897 | 17,897 | 17,925 ± 36 | 2.05E–3 |
IR length (bp) | 26,148 | 26,145 | 26,149 | 26,082 | 26,148 | 26,149 | 26,082 | 26,118 ± 29 | 1.13E−3 |
Genes number | 133 | 133 | 133 | 131 | 131 | 130 | 131 | 132 | 0 |
Protein-coding genes | 88 | 88 | 88 | 86 | 86 | 85 | 86 | 87 | 0 |
tRNA | 37 | 37 | 37 | 37 | 37 | 37 | 37 | 37 | 0 |
rRNA | 8 | 8 | 8 | 8 | 8 | 8 | 8 | 8 | 0 |
Overall GC content (%) | 37.18 | 37.12 | 37.16 | 37.18 | 37.14 | 37.17 | 37.18 | 37.16 ± 0.02 | – |
GC content in LSC (%) | 34.96 | 34.89 | 34.94 | 34.94 | 34.90 | 34.95 | 34.95 | 34.93 ± 0.03 | – |
GC content in SSC (%) | 31.53 | 31.43 | 31.52 | 31.54 | 31.47 | 31.52 | 31.54 | 31.51 ± 0.04 | – |
GC content in IR (%) | 42.80 | 42.76 | 42.80 | 42.83 | 42.82 | 42.81 | 42.83 | 42.81 ± 0.02 | – |
Accession no. in GenBank | MZ577999 | MZ577998 | ON597627 | NC_032008/KY014105 | NC_035727/MF357889 | NC_035974/MF536694 | NC_033899/KY430686 | – | – |
