Table 1 Primer and probe information for ddPCR assays.

From: Quantitation and integrity evaluation of RNA genome in lentiviral vectors by direct reverse transcription-droplet digital PCR (direct RT-ddPCR)

Primer/probe namea

DNA sequence

Amplicon size

5′ LTR-F6

TGCCCGTCTGTTGTGTGACT

140

5′ LTR-R6

CGAGTCCTGCGTCGAGAGA

5′ LTR-P

Fam-AGTCCCTGTTCGGGC-MGB

Psi-F6

CTCTCTCGACGCAGGACTCG

126

Psi-R6

GACGCTCTCGCACCCATCT

Psi-P

VIC-CTCTTGCCGTGCGCG-MGB

RRE-F

AAACTCATTTGCACCACTGC

106

RRE-R

AATTTCTCTGTCCCACTCCATC

RRE-P

Fam-TGTGCCTTGGAATGC-MGB

eGFP-F

TGCTGCCCGACAACCACT

80

eGFP-R

CAGGACCATGTGATCGCG

eGFP-P

Fam-TGAGCAAAGACCCCAAC-MGB

WPRE-F

TTACGCTATGTGGATACGCTG

109

WPRE-R

TCATAAAGAGACAGCAACCAGG

WPRE-P

VIC-AGGAGAAAATGAAAGCCATAC-MGB

  1. aF, forward primer; R, reverse primer; P, probe.