Table 1 A comparative account of the genome of coconut cultivar Chowghat Green Dwarf.
From: Chromosome scale genome assembly and annotation of coconut cultivar Chowghat Green Dwarf
| Â | CGD version 1.0 (Rajesh et al., 2020) | CGD version 2.0 (current study) |
|---|---|---|
Sequencing technologies | SMRT PacBio RSII and Illumina sequencing | Illumina, ONT, SMRT PacBio RS II, and HiC |
Total number of scaffolds | 26,885 | 16 pseudomolecules (1912 unplaced scaffolds) |
Assembly size (Gb) | ~ 1.93 | ~ 2.68 |
Longest scaffold size (Mb) | ~ 1.26 | ~ 241.6 |
N50 (Mb) | 0.128 | ~ 174 |
BUSCO completeness (%) | 84.6 | 96.80 |
Quality value (QV) | - | 32.30 |
LAI index | - | 8.54 |
Predicted gene models | 13,707 | 34,483 |
Annotated genes | 5980 | 29,147 |
tRNA genes | 470 | 1676 |
rRNA genes | 463 | 1383 |
Repetitive DNA (Gb) | ~ 1.48 | ~ 2.19 |
GC (%) | 37.59 | 37.70 |
