Table 4 Candidate genes for seed related traits discovered in QTL hotspots on rice chromosome 7 and 2.
Locus ID | Position†| Description | Gene name synonym* |
|---|---|---|---|
Os07g0669800 | chr07:28324762..28335077 (+) | Cysteine-tryptophan (CW) ___domain-containing zinc finger protein, Regulation of grain width (Os07t0669800-01) | WG7, OsCW-ZF7, CW-ZF7, CWZF7, OsWG7 |
Os07g0669500 | chr07:28299602..28301089 (−) | ERF transcription factor, Mediation of the transition from spikelet to floret meristem, Determination of panicle branching and spikelet formation (Os07t0669500-01) | FZP, SGDP7, BFL1, COS1, qSrn7/FZP, qSrn7, fzp, OsBD1, BD1, OsERF#078, OsERF078, OsERF78, ERF78, AP2/EREBP#133, AP2/EREBP133, BFL1, SGDP7, OsSGDP7 |
Os07g0675000 | chr07:28552641..28558965 (+) | Similar to predicted protein. (Os07t0675000-01); Protein kinase-like ___domain containing protein. (Os07t0675000-02);Similar to IBR3 (IBA-RESPONSE 3); acyl-CoA dehydrogenase/ oxidoreductase. (Os07t0675000-03) | – |
Os07g0658200 | chr07:27706359..27709933 (−) | Similar to 30S ribosomal protein S9. (Os07t0658200-01); Similar to 30S ribosomal protein S9. (Os07t0658200-02) | – |
Os07g0660700 | chr07:27850797..27855081 ( +) | WD repeat protein 55 ___domain containing protein. (Os07t0660700-01) | OsWD40-149, OsDWD30, DWD30 |
Os07g0671000 | chr07:28367865..28368346 (+) | Homologue of Arabidopsis FLOWERING PROMOTING FACTOR1 (FPF1), ACE1 homologue, Control of internode elongation during the reproductive phase (Os07t0671000-01) | ACL1, FPFL5, OsFPFL5, ACL1, OsACL1 |
Os02g0242600 | chr02:8057652..8059642 (+) | Similar to Glutelin. (Os02t0242600-01) | GLUBX, OsGluBX, OsGluBX-J, OsGluBX-I, OsEnS-31, EnS-31, GLU2.1, GluB7, OsGluB7 |
Os02g0244300 | chr02:8135122..8143345 (+) | Ubiquitin-specific protease, Deubiquitination enzyme, Positive regulation of grain width and size (Os02t0244300-01) | OsUBP15, LG1, LG1, OsLG1, OsUBP15, UBP15, OsUBP15/LG1, OsUBP7-1, UBP7-1 |
Os02g0248800 | chr02:8401328..8403216 (−) | Similar to Glutelin type-B 2 precursor. (Os02t0248800-01) | GLUB6, OsEnS-32, EnS-32, GluB6, OsGluB6 |
Os02g0249000 | chr02:8406709..8408682 (−) | Glutelin, Seed strage protein (Os02t0249000-01) | GLUD1, GluD1, GluD-1, OsEnS-33, GLUD1, GluD1, GluD-1, OsGluD-1, OsEnS-33, EnS-33, GluD |
Os02g0249600 | chr02:8446623..8448546 (+) | Similar to Glutelin. (Os02t0249600-01) | GLU7, Glu7*(GluB2), Glu7, GluB2, GLUB2, GLUB-2, GluB-2, GluB-7, GLUB7 |
Os02g0249800 | chr02:8458664..8460633 (-) | Glutelin precursor. (Os02t0249800-01) | GLUB1A, GluB, GluB-1a, OsGluB-1a, GluB-1b |
Os02g0249900 | chr02:8465066..8467035 (+) | Glutelin precursor. (Os02t0249900-01) | GLUB1, GluB1, GluB1-A, GluB-1a, GluB-1, OsGluB1, GluB-1b, OsGluB-1b, GLUB1B |
