Table 1 Simple sequence repeats (SSR) of cp genomes of the nine Camellia accessions.

From: Nine complete chloroplast genomes of the Camellia genus provide insights into evolutionary relationships and species differentiation

SSR type

Length/bp

SSR

Annotation

Region

Cept

J100

J49

J51

J94

J105

J106

J108

J72

p4

12

12

12

12

12

12

12

12

12

(AGAT)3

rps16

LSC

p4

12

12

12

12

12

12

12

12

12

(GTCT)3

atpA

LSC

p2

10

10

10

10

10

10

10

10

10

(AT)5

rpoC2

LSC

p4

12

12

12

12

12

12

12

12

12

(TCTT)3

psbD

LSC

p4

12

12

12

12

12

12

12

12

12

(TTTC)3

ycf3

LSC

p4

12

12

12

12

12

12

12

12

12

(AAAT)3

ycf4

LSC

p4

 

12

12

 

12

12

 

12

 

(AAAT)3

psaJ

LSC

p3

12

12

12

12

12

12

12

12

12

(TTC)4

rpl33

LSC

p3

12

–

–

–

–

–

–

–

–

(ATT)4

psbB

LSC

p2

10

–

–

10

10

–

10

–

–

(AT)5

rpl16

LSC

p2

10

10

10

10

12

10

10

10

10

(TA)5

rpl2

IRA/B

p4

12

12

12

12

12

12

12

12

12

(TCTA)3

ycf2

IRA/B

p4

12

12

12

12

12

12

12

12

12

(CCCT)3

ndhF

SSC

p6

18

–

–

–

–

–

–

–

–

(CTTTTT)3

rps7

IRA/B

p4

12

12

12

12

12

12

12

12

12

(GAAA)3

ndhD

SSC

p4

12

12

12

12

12

12

12

12

12

(AATA)3

psaC

SSC

p6

18

–

–

–

–

–

–

–

–

(AAAAAG)3

ycf1

SSC

p4

12

12

12

12

12

12

12

12

12

(GAGG)3

rps7

IRA/B

p4

12

12

12

12

12

12

12

12

12

(ATAG)3

ycf2

IRA/B

p2

10

10

10

10

10

10

10

10

10

(AT)5

rpl2

IRB

Total

19

16

16

16

17

16

16

16

15

   
  1. The SSR types p2, p3, p4 and p6 represent 2-, 3-, 4- and 6-nucleotide repeat units, respectively. The numbers in the SSR column correspond to the number of sequence repeats. Cept: Camellia petelotii; J100: Sanyuecha; J49: L.T.Dees; J51: Massee Lane;J94: Kagirohi; J105: Xiameng Hualin; J106: Xiameng Wenqing; J108: Xiameng Xiaoxuan; J72: Songzi.
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