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Showing 1–50 of 137 results
Advanced filters: Author: Allen Song Clear advanced filters
  • Three electron microscopy datasets are combined to provide a complete connectomic description of the neural circuitry that makes up the neck connective in Drosophila, including the descending neurons, ascending neurons and sensory ascending neurons.

    • Tomke Stürner
    • Paul Brooks
    • Katharina Eichler
    ResearchOpen Access
    Nature
    Volume: 643, P: 158-172
  • Fungal diversity is critical for ecosystem functioning, yet its role in mediating the relationship between plant diversity and ecosystem multifunctionality remains unclear. This study finds that fungal diversity can buffer reductions in ecosystem multifunctionality associated with low plant diversity.

    • Zhenwei Xu
    • Xiao Guo
    • Weihua Guo
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-14
  • The affected cellular populations during Alzheimer’s disease progression remain understudied. Here the authors use a cohort of 84 donors, quantitative neuropathology and multimodal datasets from the BRAIN Initiative. Their pseudoprogression analysis revealed two disease phases.

    • Mariano I. Gabitto
    • Kyle J. Travaglini
    • Ed S. Lein
    ResearchOpen Access
    Nature Neuroscience
    Volume: 27, P: 2366-2383
  • Cerebellar nuclei (CN) neurons receive synapses from Purkinje cells, yet how these are spatially organized has been unknown. Here, authors show inputs are clustered along transverse zones with many CN cells receiving multi-zonal input, suggesting multimodal integration occurs in the CN.

    • Kim M. Gruver
    • Jenny W. Y. Jiao
    • Alanna J. Watt
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-14
  • A genome-wide association study meta-analysis combined with multiomics data of osteoarthritis identifies 700 effector genes as well as biological processes with a convergent involvement of multiple effector genes; 10% of these genes express the target of approved drugs.

    • Konstantinos Hatzikotoulas
    • Lorraine Southam
    • Eleftheria Zeggini
    ResearchOpen Access
    Nature
    Volume: 641, P: 1217-1224
  • A spatially resolved transcriptional atlas of the mid-gestational developing human brain has been created using laser-capture microdissection and microarray technology, providing a comprehensive reference resource which also enables new hypotheses about the nature of human brain evolution and the origins of neurodevelopmental disorders.

    • Jeremy A. Miller
    • Song-Lin Ding
    • Ed S. Lein
    Research
    Nature
    Volume: 508, P: 199-206
  • Here the authors analyzed 3.7 petavoxels of 3D imaging data from 204 mouse brains, aiming to comprehensively characterize diverse morphological and modular patterns conserved across six spatial scales of mouse brain anatomy, ranging from the whole-brain scale to synaptic levels.

    • Yufeng Liu
    • Shengdian Jiang
    • Hanchuan Peng
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-23
  • Little is known about von Economo neurons, which have been described in a subset of mammals and appear to be selectively lost in several human neurological diseases. Here, authors reveal the gene expression profile of these cells and show that they are likely long-distance projection neurons.

    • Rebecca D. Hodge
    • Jeremy A. Miller
    • Ed S. Lein
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-14
  • RNA-sequencing analysis of cells in the human cortex enabled identification of diverse cell types, revealing well-conserved architecture and homologous cell types as well as extensive differences when compared with datasets covering the analogous region of the mouse brain.

    • Rebecca D. Hodge
    • Trygve E. Bakken
    • Ed S. Lein
    Research
    Nature
    Volume: 573, P: 61-68
    • FRANK J. ALLEN
    Research
    Nature
    Volume: 22, P: 122
  • The BRAIN Initiative Cell Census Network has constructed a multimodal cell census and atlas of the mammalian primary motor cortex in a landmark effort towards understanding brain cell-type diversity, neural circuit organization and brain function.

    • Edward M. Callaway
    • Hong-Wei Dong
    • Susan Sunkin
    ResearchOpen Access
    Nature
    Volume: 598, P: 86-102
  • Genomic and phenomic screens of 827 wheat landraces from the A. E. Watkins collection provide insight into the wheat population genetic background, unlocking many agronomic traits and revealing haplotypes that could potentially be used to improve modern wheat cultivars.

    • Shifeng Cheng
    • Cong Feng
    • Simon Griffiths
    ResearchOpen Access
    Nature
    Volume: 632, P: 823-831
  • Meta-analysis of genome-wide association studies on Alzheimer’s disease and related dementias identifies new loci and enables generation of a new genetic risk score associated with the risk of future Alzheimer’s disease and dementia.

    • Céline Bellenguez
    • Fahri Küçükali
    • Jean-Charles Lambert
    ResearchOpen Access
    Nature Genetics
    Volume: 54, P: 412-436
  • FlyWire is an online community and a platform for proofreading electron microscopy-based connectome data of the Drosophila brain.

    • Sven Dorkenwald
    • Claire E. McKellar
    • H. Sebastian Seung
    Research
    Nature Methods
    Volume: 19, P: 119-128
  • Sparse labelling and whole-brain imaging are used to reconstruct and classify brain-wide complete morphologies of 1,741 individual neurons in the mouse brain, revealing a dependence on both brain region and transcriptomic profile.

    • Hanchuan Peng
    • Peng Xie
    • Hongkui Zeng
    ResearchOpen Access
    Nature
    Volume: 598, P: 174-181
  • An examination of motor cortex in humans, marmosets and mice reveals a generally conserved cellular makeup that is likely to extend to many mammalian species, but also differences in gene expression, DNA methylation and chromatin state that lead to species-dependent specializations.

    • Trygve E. Bakken
    • Nikolas L. Jorstad
    • Ed S. Lein
    ResearchOpen Access
    Nature
    Volume: 598, P: 111-119
  • Visual signals that help individuals recognize their own species are predicted to be distinct from those of closely related sympatric species, but evidence for this pattern is scarce. Here, Allen et al.show guenon faces are distinctive, specifically from those of other guenon species they encounter.

    • William L. Allen
    • Martin Stevens
    • James P. Higham
    Research
    Nature Communications
    Volume: 5, P: 1-10
  • In the second case in which a genetically modified pig heart was transplanted into a living person, the xenografted heart functioned well initially, but antibody-mediated rejection occurred thereafter, pointing to the need for improved strategies to avoid this complication.

    • Bartley P. Griffith
    • Alison Grazioli
    • Muhammad M. Mohiuddin
    Research
    Nature Medicine
    Volume: 31, P: 589-598
  • DeepInterpolation is a self-supervised deep learning-based denoising approach for calcium imaging, electrophysiology and fMRI data. The approach increases the signal-to-noise ratio and allows extraction of more information from the processed data than from the raw data.

    • Jérôme Lecoq
    • Michael Oliver
    • Christof Koch
    Research
    Nature Methods
    Volume: 18, P: 1401-1408
  • Cryo-electron microscopy is widely employed in structural biology and uses phase contrast imaging. Here, the authors employ electron ptychography, a quantitative phase retrieval method for high-contrast, low-dose phase imaging of cryo-state rotavirus and immature HIV-1 virus-like particles, and show that electron ptychography is more efficient for phase recovery than conventional phase contrast imaging.

    • Liqi Zhou
    • Jingdong Song
    • Peng Wang
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-9
  • A multi-modal analysis of pre-metastatic liver biopsies from patients with localized pancreatic cancer with a minimum of 3 years of follow-up shows that immunological, proliferative and metabolomic features distinguish patients who develop metastases from disease-free survivors and can be used to predict outcomes.

    • Linda Bojmar
    • Constantinos P. Zambirinis
    • David Lyden
    Research
    Nature Medicine
    Volume: 30, P: 2170-2180
  • Combined patch clamp recording, biocytin staining and single-cell RNA-sequencing of human neurocortical neurons shows an expansion of glutamatergic neuron types relative to mouse that characterizes the greater complexity of the human neocortex.

    • Jim Berg
    • Staci A. Sorensen
    • Ed S. Lein
    ResearchOpen Access
    Nature
    Volume: 598, P: 151-158
  • The physiological phenomenon whereby heart rate varies in phase with breathing in vertebrates has been known as ‘respiratory sinus arrhythmia’. In this Expert Recommendation, the authors argue that this terminology is potentially misleading and propose replacing it with the term ‘respiratory heart rate variability’, which avoids pathological connotations.

    • Clément Menuet
    • Alona Ben-Tal
    • Alexander V. Gourine
    Reviews
    Nature Reviews Cardiology
    P: 1-7
  • Assigning function to uncharacterized enzymes discovered through genome projects has provided a great challenge to the fields of informatics, enzymology and structural biology. Docking potential ligands into flexible models of protein structures and docking potential high-energy intermediates, rather than substrates, into known structures are two new computational approaches that have provided a much-needed boost to the field.

    • Karen N Allen
    News & Views
    Nature Chemical Biology
    Volume: 3, P: 452-453
  • Scalable CRISPRa screening of cis-regulatory elements in non-cancer cell lines has proved challenging. Here, the authors describe a scalable, CRISPR activation screening framework to identify regulatory element-gene pairs in diverse cell types including cancer cells and neurons.

    • Florence M. Chardon
    • Troy A. McDiarmid
    • Jay Shendure
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-15
  • Methylome-based clustering and cross-modality integration with companion datasets from the BRAIN Initiative Cell Census Network enabled the construction of a 3D multi-omic genome atlas of the adult mouse brain featuring thousands of cell-type-specific profiles.

    • Hanqing Liu
    • Qiurui Zeng
    • Joseph R. Ecker
    ResearchOpen Access
    Nature
    Volume: 624, P: 366-377
  • A global network of researchers was formed to investigate the role of human genetics in SARS-CoV-2 infection and COVID-19 severity; this paper reports 13 genome-wide significant loci and potentially actionable mechanisms in response to infection.

    • Mari E. K. Niemi
    • Juha Karjalainen
    • Chloe Donohue
    ResearchOpen Access
    Nature
    Volume: 600, P: 472-477
  • The collision of the Indian, Arabian and Eurasian plates formed the Tibetan and Iranian plateaus, but its timing and processes remain debated. This Review explores the evidence behind initial collision estimates and discusses the tectonic and geodynamic implications.

    • Chao Wang
    • Lin Ding
    • Muhammad Qasim
    Reviews
    Nature Reviews Earth & Environment
    Volume: 6, P: 357-376
  • Application of multiplexed RNA in situ mapping techniques to human tissues remains challenging. Here, the authors report DART-FISH, a padlock probe-based technology capable of profiling large numbers of genes in centimetre-sized human tissue sections.

    • Kian Kalhor
    • Chien-Ju Chen
    • Kun Zhang
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-17
  • A high-resolution gene expression atlas of prenatal and postnatal brain development of rhesus monkey charts global transcriptional dynamics in relation to brain maturation, while comparative analysis reveals human-specific gene trajectories; candidate risk genes associated with human neurodevelopmental disorders tend to be co-expressed in disease-specific patterns in the developing monkey neocortex.

    • Trygve E. Bakken
    • Jeremy A. Miller
    • Ed S. Lein
    Research
    Nature
    Volume: 535, P: 367-375
  • Rivers are among the most diverse, dynamic, and productive ecosystems on Earth. Here, using Landsat imagery, the authors provide a global attribution of the recent changes in river regime to morphological dynamics, dam-induced widening, and hydrological signals.

    • Qianhan Wu
    • Linghong Ke
    • Chunqiao Song
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-13
  • Large genome-wide meta-analysis of clinically diagnosed late-onset Alzheimer’s disease (LOAD) from 94,437 individuals identifies new LOAD risk loci and implicates Aβ formation, tau protein binding, immune response and lipid metabolism.

    • Brian W. Kunkle
    • Benjamin Grenier-Boley
    • Margaret A. Pericak-Vance
    Research
    Nature Genetics
    Volume: 51, P: 414-430
  • Deep mantle heterogeneity and large-scale deep mantle convection has been operating since the Palaeoarchaean, according to enriched plume signatures found in a 3.45-billion-year-old ultramafic–mafic suite from the North China Craton.

    • Chao Wang
    • Shuguang Song
    • Jinlong Dong
    Research
    Nature Geoscience
    Volume: 12, P: 672-678
  • Entanglement was observed in top–antitop quark events by the ATLAS experiment produced at the Large Hadron Collider at CERN using a proton–proton collision dataset with a centre-of-mass energy of √s  = 13 TeV and an integrated luminosity of 140 fb−1.

    • G. Aad
    • B. Abbott
    • L. Zwalinski
    ResearchOpen Access
    Nature
    Volume: 633, P: 542-547
  • A combination of three monoclonal antibodies transiently reduced viremia in people living with HIV-1 and not on antiretroviral therapy, but it did not prevent viral rebound. Further studies are needed to determine if this approach can be optimized.

    • Boris Julg
    • Kathryn E. Stephenson
    • Dan H. Barouch
    ResearchOpen Access
    Nature Medicine
    Volume: 28, P: 1288-1296
  • Endocrinologists have traditionally focused on studying one hormone or organ system at a time. Here the authors use transcriptomic data from the mouse lemur to globally characterize primate hormonal signaling, describing hormone sources and targets, identifying conserved and primate specific regulation, and elucidating principles of the network.

    • Shixuan Liu
    • Camille Ezran
    • James E. Ferrell Jr.
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-27