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Showing 101–150 of 332 results
Advanced filters: Author: Benjamin D. Simons Clear advanced filters
  • Using unique barcodes for tumour cells, the authors explore the dynamics of human glioblastoma subpopulations, and suggest that clonal heterogeneity emerges through stochastic fate decisions of a neutral proliferative hierarchy.

    • Xiaoyang Lan
    • David J. Jörg
    • Peter B. Dirks
    Research
    Nature
    Volume: 549, P: 227-232
  • Here the authors perform a high-throughput screen to identify compounds that stimulate or repress the splicing of neuronal microexons. One of these compounds rescues the splicing of several microexons in the brains of mice haploinsufficient for Srrm4.

    • Andrew J. Best
    • Ulrich Braunschweig
    • Benjamin J. Blencowe
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-17
  • An improved, fully re-annotated Aedes aegypti genome assembly (AaegL5) provides insights into the sex-determining M locus, chemosensory systems that help mosquitoes to hunt humans and loci involved in insecticide resistance and will help to generate intervention strategies to fight this deadly disease vector.

    • Benjamin J. Matthews
    • Olga Dudchenko
    • Leslie B. Vosshall
    ResearchOpen Access
    Nature
    Volume: 563, P: 501-507
  • The anomeric effect is a chemical phenomenon that refers to an observed stabilization of six-membered carbohydrate rings when they contain an electronegative substituent at the C1 position of the ring. This stereoelectronic effect influences the three-dimensional shapes of many biological molecules, but the underlying physical origin is unclear. Here it is shown that complexes formed between a truncated peptide motif and an isolated sugar in the gas phase are nearly identical structurally; however, the strength of the polarization of their interactions with the peptide differs greatly. It will be important to re-evaluate the influence, and biological effects, of substituents at position C2 of the six-membered carbohydrate rings.

    • Emilio J. Cocinero
    • Pierre Carcabal
    • Benjamin G. Davis
    Research
    Nature
    Volume: 469, P: 76-79
  • Using genetic lineage tracing, tumour cells are traced in vivo in an unperturbed solid tumour; in a carcinogen-induced papilloma mouse model, cells in these benign lesions are found to mirror the clonal hierarchy organization of normal tissue.

    • Gregory Driessens
    • Benjamin Beck
    • Cédric Blanpain
    Research
    Nature
    Volume: 488, P: 527-530
  • The existence of a topological bulk-boundary correspondence for Dirac semimetals has remained an open question. Here, Wieder et al. predict one-dimensional hinge states originating from bulk three-dimensional Dirac points in solid-state Dirac semimetals, revealing condensed matter Dirac fermions to be higher-order topological.

    • Benjamin J. Wieder
    • Zhijun Wang
    • B. Andrei Bernevig
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-13
  • The halictid bee Lasioglossum albipes has both solitary and eusocial individuals, making it a model for social evolution. Here, Kocher et al. identify a genetic variation associated with this social polymorphism, including a variant that can regulate the expression of an autism-associated gene, syntaxin 1a.

    • Sarah D. Kocher
    • Ricardo Mallarino
    • Naomi E. Pierce
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-7
  • A report from the Australian Acute Care Genomics programme shows that the integration of rapid whole-genome sequencing and multi-omic analyses informs diagnoses and treatment decisions in a prospective cohort of 290 critically ill infants and children.

    • Sebastian Lunke
    • Sophie E. Bouffler
    • Zornitza Stark
    ResearchOpen Access
    Nature Medicine
    Volume: 29, P: 1681-1691
  • Whether a single group of stem cells or multiple populations contribute to the homeostasis of the interfollicular epidermis is controversial; here the authors use lineage tracing and mathematical modelling to show that the progenitors that maintain mouse epidermis are underpinned by slow-cycling stem cells that become mobilized on injury.

    • Guilhem Mascré
    • Sophie Dekoninck
    • Cédric Blanpain
    Research
    Nature
    Volume: 489, P: 257-262
  • The band topology of nonmagnetic crystals can be characterized by Topological Quantum Chemistry (TQC), whereas the band topology of magnetic crystals remains unexplored. Here, the authors extend TQC to the magnetic space groups to form a complete, real-space theory of band topology in magnetic and nonmagnetic crystalline solids.

    • Luis Elcoro
    • Benjamin J. Wieder
    • B. Andrei Bernevig
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-10
  • The dynamic relaxation spectrum of a supercooled liquid is asymmetric near the glass transition. Overcoming the difficulty of accessing low temperatures and long timescales, simulations now attribute this feature to dynamic facilitation.

    • Benjamin Guiselin
    • Camille Scalliet
    • Ludovic Berthier
    Research
    Nature Physics
    Volume: 18, P: 468-472
  • Serological testing remains a passive component of the current public health response to the COVID-19 pandemic. Using a mathematical model, the authors examine how testing for antibodies could have enabled policies in which seropositive individuals increased their relative levels of social interaction while offsetting transmission risks

    • Alicia N. M. Kraay
    • Kristin N. Nelson
    • Benjamin A. Lopman
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-10
  • Grockowiak et al. explore bone marrow niche heterogeneity in myeloproliferative neoplasms, polycytemia vera and essential thrombocytemia and find JAK2-mutated hematopoietic stem cells occupying distinct niches affecting cell growth and therapy response.

    • Elodie Grockowiak
    • Claudia Korn
    • Simón Méndez-Ferrer
    ResearchOpen Access
    Nature Cancer
    Volume: 4, P: 1193-1209
  • Elise Robinson and colleagues present the polygenic transmission disequilibrium test (pTDT) for evaluating transmission of polygenic risk in family-based study designs. The authors apply pTDT to a cohort of autism spectrum disorder (ASD) families and find that common polygenic variation acts additively with de novo variants to contribute to ASD risk.

    • Daniel J Weiner
    • Emilie M Wigdor
    • Elise B Robinson
    Research
    Nature Genetics
    Volume: 49, P: 978-985
  • Three-dimensional simulations of massive star convection show that core-convection-driven gravity wave oscillations at the surface of the star are not the source of ‘red noise’ seen in photometric observations. The search for the source continues.

    • Evan H. Anders
    • Daniel Lecoanet
    • Adam S. Jermyn
    ResearchOpen Access
    Nature Astronomy
    Volume: 7, P: 1228-1234
  • Conventional selections of AAV capsid libraries are inefficient at searching sequence space. Here the authors report ‘Fit4Function’, a generalizable ML approach for systematically engineering multi-trait AAV capsids, and use this to predict cross-species traits of peptide-modified AAV capsids.

    • Fatma-Elzahraa Eid
    • Albert T. Chen
    • Benjamin E. Deverman
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-14
  • Many topological crystalline phases have unknown physical responses. Here, the authors systematically extend the theory of defect and flux responses to predict zero-dimensional (0D) states in topological crystalline materials, including 2D PbTe monolayers and 3D SnTe.

    • Frank Schindler
    • Stepan S. Tsirkin
    • Benjamin J. Wieder
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-18
  • Honey bee workers take on different tasks for the colony as they age. Here, the authors develop a method to extract a descriptor of the individuals’ social networks and show that interaction patterns predict task allocation and distinguish different developmental trajectories.

    • Benjamin Wild
    • David M. Dormagen
    • Tim Landgraf
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-12
  • Emerging sulfur isotope data divides opinion surrounding the Great Oxidation Event. Utilising computational approaches and additional data, Uveges et al. reconcile these disparities, offering a more refined framework of atmospheric oxygenation.

    • Benjamin T. Uveges
    • Gareth Izon
    • Roger E. Summons
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-12
  • KIF14 is a mitotic kinesin whose malfunction is associated with cerebral and renal developmental defects and several cancers. Here the authors use cryoEM to determine 20 structures of KIF14 constructs bound to microtubules in the presence of different nucleotide analogues and provide the structural basis for a coordinated chemo-mechanical kinesin translocation model.

    • Matthieu P.M.H. Benoit
    • Ana B. Asenjo
    • Hernando Sosa
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-21
  • Bower et al. describe a population of mural lymphatic endothelial cells found along meningeal blood vessels in the adult zebrafish. These mural cells are distinct from meningeal lymphatic vessel cells but form by developmental lymphangiogenesis. They take up low-density lipoproteins from the bloodstream and can modulate angiogenesis during meningeal vascularization.

    • Neil I Bower
    • Katarzyna Koltowska
    • Benjamin M Hogan
    Research
    Nature Neuroscience
    Volume: 20, P: 774-783
  • Patagia—the mammalian gliding membrane—repeatedly originated through a process of convergent genomic evolution, whereby the regulation of Emx2 was altered by distinct cis-regulatory elements in independently evolved species.

    • Jorge A. Moreno
    • Olga Dudchenko
    • Ricardo Mallarino
    ResearchOpen Access
    Nature
    Volume: 629, P: 127-135
  • Analysis of whole-genome sequencing data across 2,658 tumors spanning 38 cancer types shows that chromothripsis is pervasive, with a frequency of more than 50% in several cancer types, contributing to oncogene amplification, gene inactivation and cancer genome evolution.

    • Isidro Cortés-Ciriano
    • Jake June-Koo Lee
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 331-341
  • Analysis of mitochondrial genomes (mtDNA) by using whole-genome sequencing data from 2,658 cancer samples across 38 cancer types identifies hypermutated mtDNA cases, frequent somatic nuclear transfer of mtDNA and high variability of mtDNA copy number in many cancers.

    • Yuan Yuan
    • Young Seok Ju
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 342-352
  • The atmospheric terminator region of WASP-39 b, a hot gas giant exoplanet, is inhomogeneous, despite past assumptions, with the evening terminator being hotter and thus probably clearer, and the morning terminator probably being cloudy and consequently cooler.

    • Néstor Espinoza
    • Maria E. Steinrueck
    • Nicolas Crouzet
    ResearchOpen Access
    Nature
    Volume: 632, P: 1017-1020
  • The Cancer Genome Atlas Research Network reports an integrative analysis of more than 400 samples of clear cell renal cell carcinoma based on genomic, DNA methylation, RNA and proteomic characterisation; frequent mutations were identified in the PI(3)K/AKT pathway, suggesting this pathway might be a potential therapeutic target, among the findings is also a demonstration of metabolic remodelling which correlates with tumour stage and severity.

    • Chad J. Creighton
    • Margaret Morgan
    • Heidi J. Sofia.
    ResearchOpen Access
    Nature
    Volume: 499, P: 43-49
  • Evidence is found for a distant galaxy growing inside-out within the first 700 million years of the Universe. The galaxy has a dense central core comparable in mass density to local massive ellipticals, and an extended star-forming disc.

    • William M. Baker
    • Sandro Tacchella
    • Joris Witstok
    ResearchOpen Access
    Nature Astronomy
    Volume: 9, P: 141-154
  • An alternative model for the homeostasis of adult epidermis posits posits only one type of stem cell undergoes both symmetric and asymmetric divisions to ensure epidermal homeostasis. A genetic approach of marking single cells in the adult mouse tail epidermis shows that the clones of labelled cells that arise from their inducible labelling approach are most likely to come from a single compartment of proliferating cells, which may undergo an unlimited number of divisions.

    • Elizabeth Clayton
    • David P. Doupé
    • Philip H. Jones
    Research
    Nature
    Volume: 446, P: 185-189
  • An interbacterial defence strategy, involving clusters of immunity genes against toxins released by the type VI secretion system of the same or different species, is widespread among Bacteroides species, and transfer of these gene clusters confers resistance to toxins in vitro and in the mammalian gut.

    • Benjamin D. Ross
    • Adrian J. Verster
    • Joseph D. Mougous
    Research
    Nature
    Volume: 575, P: 224-228
  • How the developing skin epidermis is transformed from a simple single-layered epithelium to a complex and stratified barrier is still an open question. Here, the authors provide a model based on high proliferation and delamination of the keratinocyte progenitors that support the stratification process.

    • Mareike Damen
    • Lisa Wirtz
    • Hisham Bazzi
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-16
  • JWST–NIRSpec spectroscopic confirmation of two luminous galaxies is presented, proving that luminous galaxies were already in place 300 million years after the Big Bang and are more common than what was expected before JWST.

    • Stefano Carniani
    • Kevin Hainline
    • Christopher N. A. Willmer
    ResearchOpen Access
    Nature
    Volume: 633, P: 318-322
  • Analysis of the JWST/NIRSpec spectrum of the recently observed Lyman-break galaxy JADES-GS+53.15508-27.80178 revealed a redshift of z = 7.3, a Balmer break and a complete absence of nebular emission lines, indicating that quenching occurred only 700 million years after the Big Bang.

    • Tobias J. Looser
    • Francesco D’Eugenio
    • Jan Scholtz
    ResearchOpen Access
    Nature
    Volume: 629, P: 53-57