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Showing 51–100 of 1790 results
Advanced filters: Author: David Han Clear advanced filters
  • Psoriasis is a partially heritable skin disorder, the genetic basis of which is not fully understood. Here, the authors use genome-wide association meta-analysis to discover psoriasis susceptibility loci and genes, which encode existing and potential new drug targets.

    • Nick Dand
    • Philip E. Stuart
    • James T. Elder
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-14
  • There’s an emerging body of evidence to show how biological sex impacts cancer incidence, treatment and underlying biology. Here, using a large pan-cancer dataset, the authors further highlight how sex differences shape the cancer genome.

    • Constance H. Li
    • Stephenie D. Prokopec
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-24
  • This report from the 1000 Genomes Project describes the genomes of 1,092 individuals from 14 human populations, providing a resource for common and low-frequency variant analysis in individuals from diverse populations; hundreds of rare non-coding variants at conserved sites, such as motif-disrupting changes in transcription-factor-binding sites, can be found in each individual.

    • Gil A. McVean
    • David M. Altshuler (Co-Chair)
    • Gil A. McVean
    ResearchOpen Access
    Nature
    Volume: 491, P: 56-65
  • Analysis of ancient genomic data of 51 humans from Eurasia dating from 45,000 to 7,000 years ago provides insight into the population history of pre-Neolithic Europe and support for recurring migration and population turnover in Europe during this period.

    • Qiaomei Fu
    • Cosimo Posth
    • David Reich
    Research
    Nature
    Volume: 534, P: 200-205
  • Integrative analyses of transcriptome and whole-genome sequencing data for 1,188 tumours across 27 types of cancer are used to provide a comprehensive catalogue of RNA-level alterations in cancer.

    • Claudia Calabrese
    • Natalie R. Davidson
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 129-136
  • Viral pathogen load in cancer genomes is estimated through analysis of sequencing data from 2,656 tumors across 35 cancer types using multiple pathogen-detection pipelines, identifying viruses in 382 genomic and 68 transcriptome datasets.

    • Marc Zapatka
    • Ivan Borozan
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 320-330
  • Some cancer patients first present with metastases where the ___location of the primary is unidentified; these are difficult to treat. In this study, using machine learning, the authors develop a method to determine the tissue of origin of a cancer based on whole sequencing data.

    • Wei Jiao
    • Gurnit Atwal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Many tumours exhibit hypoxia (low oxygen) and hypoxic tumours often respond poorly to therapy. Here, the authors quantify hypoxia in 1188 tumours from 27 cancer types, showing elevated hypoxia links to increased mutational load, directing evolutionary trajectories.

    • Vinayak Bhandari
    • Constance H. Li
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-10
  • The characterization of 4,645 whole-genome and 19,184 exome sequences, covering most types of cancer, identifies 81 single-base substitution, doublet-base substitution and small-insertion-and-deletion mutational signatures, providing a systematic overview of the mutational processes that contribute to cancer development.

    • Ludmil B. Alexandrov
    • Jaegil Kim
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 94-101
  • Palm recognition faces challenges from variations in palm distance and pose. Here, the authors analyse the impact of distances, determine optimal registration settings, and introduce an edge-aware, rotation-invariant region of interest alignment method that ensures consistent palm region localization.

    • Dandan Fan
    • Xu Liang
    • David Zhang
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-12
  • A shift in algal species from cold-tolerant to warm-adapted and increased primary productivity in lake Guozha Co, China, suggest rapid ecological changes outpacing climate change in Tibetan glacial lakes, according to combined analysis of lake sedimentary ancient DNA and remote sensing records.

    • Chenliang Du
    • Ke Zhang
    • Ji Shen
    ResearchOpen Access
    Communications Earth & Environment
    Volume: 6, P: 1-13
  • Sun et al. report human lifespan changes in the brain’s functional connectome in 33,250 individuals, which highlights critical growth milestones and distinct maturation patterns and offers a normative reference for development, aging and diseases.

    • Lianglong Sun
    • Tengda Zhao
    • Yong He
    Research
    Nature Neuroscience
    Volume: 28, P: 891-901
  • Extracellular matrices are viscoelastic, yet how matrix viscoelasticity regulates the epigenome remains unclear. Here, the authors show that cells cultured on viscoelastic matrices exhibit changes in the nucleoskeleton and in chromatin that enhance cell reprogramming.

    • Yifan Wu
    • Yang Song
    • Song Li
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-19
  • Yongyong Shi, Lin He and colleagues report a genome-wide association study for schizophrenia in the Han Chinese population. They identify two new susceptibility loci on 8p12 and 1q24.2.

    • Yongyong Shi
    • Zhiqiang Li
    • Lin He
    Research
    Nature Genetics
    Volume: 43, P: 1224-1227
  • A genome-wide association meta-analysis study of blood lipid levels in roughly 1.6 million individuals demonstrates the gain of power attained when diverse ancestries are included to improve fine-mapping and polygenic score generation, with gains in locus discovery related to sample size.

    • Sarah E. Graham
    • Shoa L. Clarke
    • Cristen J. Willer
    Research
    Nature
    Volume: 600, P: 675-679
  • Severe cutaneous adverse reactions (SCAR) is a T cell-mediated, potentially lethal drug hypersensitivity (DH). Here, the authors identify a carbamazepine-specific TCR common among patients with carbamazepine-induced SCAR that confers SCAR-like pathology in mice upon carbamazepine exposure, thereby implicating specific TCRs in DH etiology.

    • Ren-You Pan
    • Mu-Tzu Chu
    • Shuen-Iu Hung
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-13
  • This study finds that sST2 is a disease-causing factor for Alzheimer’s disease. Higher sST2 levels impair microglial Aβ clearance in APOE4+ female individuals. A genetic variant, rs1921622, is associated with a reduction in sST2 level and protects against AD in APOE4+ female individuals.

    • Yuanbing Jiang
    • Xiaopu Zhou
    • Nancy Y. Ip
    ResearchOpen Access
    Nature Aging
    Volume: 2, P: 616-634
  • The genes EGLN1 and EPAS1 are candidates for high-altitude adaptations in Tibetan populations. Here, Jeong et al. demonstrate that the two genes show evidence of high-altitude ancestry in the Tibetan genome, suggesting the importance of population admixture for adaptation.

    • Choongwon Jeong
    • Gorka Alkorta-Aranburu
    • Anna Di Rienzo
    Research
    Nature Communications
    Volume: 5, P: 1-7
  • Analysis of DNA from ancient individuals of the Near East documents the extreme substructure among the populations which transitioned to farming, a structure that was maintained throughout the transition from hunter–gatherer to farmer but that broke down over the next five thousand years.

    • Iosif Lazaridis
    • Dani Nadel
    • David Reich
    Research
    Nature
    Volume: 536, P: 419-424
  • Limited whole genome sequencing (WGS) of Asian populations results in a lack of representative reference panels, hindering imputation of Asian ancestry-specific genetic variants. Here the authors use WGS data from 11,067 individuals across 17 Asian countries to create a new reference panel which shows improved imputation accuracy for South Asian populations.

    • Meng-Yuan Yang
    • Jia-Dong Zhong
    • Hou-Feng Zheng
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-14
  • Analysis of mitochondrial genomes (mtDNA) by using whole-genome sequencing data from 2,658 cancer samples across 38 cancer types identifies hypermutated mtDNA cases, frequent somatic nuclear transfer of mtDNA and high variability of mtDNA copy number in many cancers.

    • Yuan Yuan
    • Young Seok Ju
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 342-352
  • Breschi et al. investigated proteomic profiles from the Project Baseline Health Study cohort to identify whether there are differential plasma profiles associated with type 2 diabetes. They find that integration of proteomic and clinical data could enable a more refined risk-based stratification of individuals with normoglycemia or prediabetes.

    • Alessandra Breschi
    • Yuliang Wang
    • Charles C. Kim
    ResearchOpen Access
    Communications Medicine
    Volume: 5, P: 1-14
  • The mesothelium supports homeostasis and regeneration, yet its development origins remain unclear. Here, the authors uncovered the earliest mesothelium progenitor cells in zebrafish, linking Hand2 gene function to mesothelium formation and its re-activation to mesothelioma tumors.

    • Karin D. Prummel
    • Helena L. Crowell
    • Christian Mosimann
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-21
  • A quick guide to the people behind the Woo Suk Hwang story.

    • David Cyranoski
    News
    Nature
  • A panel of urinary biomarkers enables the progression of renal injury and subsequent repair and recovery to be monitored after exposure of rats to either carbapenem A or gentamicin. The authors complement this study by demonstrating that serum cystatin C is more sensitive and specific than serum creatinine and blood urea nitrogen in monitoring generalized renal function after exposure to nephrotoxicants.

    • Josef S Ozer
    • Frank Dieterle
    • David L Gerhold
    Research
    Nature Biotechnology
    Volume: 28, P: 486-494
  • Several studies show that APOE-ε4 coding variants are associated with Alzheimer’s disease (AD) risk. Here, Zhou et al. perform fine-mapping of the APOE region and find AD risk haplotypes with non-coding variants in the PVRL2 and APOC1 regions that are associated with relevant endophenotypes.

    • Xiaopu Zhou
    • Yu Chen
    • Nancy Y. Ip
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-16
  • LINE-1 activity was quantified in a large, pan-cancer dataset, finding locus-specific heterogeneity and new associations using a computational pipeline. A mathematical mediation model of p53 and L1 interactions was inferred. Somatic retrotransposition was seen in Li-Fraumeni Syndrome with heritable TP53 mutations.

    • Alexander Solovyov
    • Julie M. Behr
    • Benjamin D. Greenbaum
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-18
  • Adoptive T-cell immunotherapy offers promise to patients who are resistant to standard anti-viral strategies. Here the authors describe clinical observations in patients with viral complications treated with adoptive immunotherapy over the last 15 years.

    • Michelle A. Neller
    • George R. Ambalathingal
    • Rajiv Khanna
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-12
  • The Scythian culture was widespread throughout the Eurasian Steppe during the 1stmillennium BCE. This study provides genetic evidence for two independent origins for the Scythians in the eastern and western steppe with varying proportions of Yamnaya and East Asian ancestry, and gene flow among them.

    • Martina Unterländer
    • Friso Palstra
    • Joachim Burger
    ResearchOpen Access
    Nature Communications
    Volume: 8, P: 1-10
  • Networking remote superconducting quantum computers requires low-noise microwave-to-optical photon conversion. A transducer based on an integrated silicon electro-optomechanical resonator now achieves below one photon of added noise referred to the transducer input while operating continuously under laser drive.

    • Han Zhao
    • William David Chen
    • Mohammad Mirhosseini
    Research
    Nature Nanotechnology
    Volume: 20, P: 602-608
  • Wood density is an important plant trait. Data from 1.1 million forest inventory plots and 10,703 tree species show a latitudinal gradient in wood density, with temperature and soil moisture explaining variation at the global scale and disturbance also having a role at the local level.

    • Lidong Mo
    • Thomas W. Crowther
    • Constantin M. Zohner
    ResearchOpen Access
    Nature Ecology & Evolution
    Volume: 8, P: 2195-2212
  • Meta-analysis of genome-wide association studies on Alzheimer’s disease and related dementias identifies new loci and enables generation of a new genetic risk score associated with the risk of future Alzheimer’s disease and dementia.

    • Céline Bellenguez
    • Fahri Küçükali
    • Jean-Charles Lambert
    ResearchOpen Access
    Nature Genetics
    Volume: 54, P: 412-436