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WeiBI (web-based platform): Enriching integrated interaction network with increased coverage and functional proteins from genome-wide experimental OMICS data

Aman Chandra Kaushik
Aamir Mehmood
Dong-Qing Wei
ResearchOpen Access27 Mar 2020
Scientific Reports

Volume: 10, P: 1-7
Identification of novel inhibitors targeting Mycobacterium abscessus InhA through virtual screening, docking, and molecular dynamic simulations

Munawar Abbas
Abdullah R. Alanzi
Dong-Qing Wei
ResearchOpen Access14 Apr 2025
Scientific Reports

Volume: 15, P: 1-16
Mesophasic organization of GABA_A receptors in hippocampal inhibitory synapses

Using cryo-electron tomography to detect individual GABA_A receptors in hippocampal synapses, we discovered a hierarchical and mesophasic organization of inhibitory postsynaptic density proteins that enables efficient synaptic transmission.

Yun-Tao Liu
Chang-Lu Tao
Guo-Qiang Bi
Research02 Nov 2020
Nature Neuroscience

Volume: 23, P: 1589-1596
A transformer-based model to predict peptide–HLA class I binding and optimize mutated peptides for vaccine design

The human leukocyte antigen (HLA) complex plays an important role in building an immune response, but it is hard to predict which peptides will bind to it. Chu et al. present a transformer-based approach to identify which peptides have a high binding affinity to HLA, a task that can also be translated to other binding problems.

Yanyi Chu
Yan Zhang
Dong-Qing Wei
Research23 Mar 2022
Nature Machine Intelligence

Volume: 4, P: 300-311
Nano-particle mediated inhibition of Parkinson’s disease using computational biology approach

Aman Chandra Kaushik
Shiv Bharadwaj
Dong-Qing Wei
ResearchOpen Access15 Jun 2018
Scientific Reports

Volume: 8, P: 1-8
The PPI network analysis of mRNA expression profile of uterus from primary dysmenorrheal rats

Pei Fan
Qiao-Hui Lin
Dong-Qing Wei
ResearchOpen Access10 Jan 2018
Scientific Reports

Volume: 8, P: 1-10
scCobra allows contrastive cell embedding learning with ___domain adaptation for single cell data integration and harmonization

scCobra is a deep learning framework for single-cell data integration and harmonization. It employs contrastive learning and ___domain adaptation for batch correction, label transfer, batch simulation, and multi-omic integration.

Bowen Zhao
Kailu Song
Jun Ding
ResearchOpen Access13 Feb 2025
Communications Biology

Volume: 8, P: 1-18
Immunoinformatics approaches to explore Helicobacter Pylori proteome (Virulence Factors) to design B and T cell multi-epitope subunit vaccine

Mazhar Khan
Shahzeb Khan
Dong-Qing Wei
ResearchOpen Access16 Sept 2019
Scientific Reports

Volume: 9, P: 1-13
Theoretical Studies of Intracellular Concentration of Micro-organisms’ Metabolites

Hai-Feng Yang
Xiao-Nan Zhang
Dong-Qing Wei
ResearchOpen Access22 Aug 2017
Scientific Reports

Volume: 7, P: 1-11
Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus

Xuejun Zhang and colleagues report results of a genome-wide association study of systemic lupus erythematosus (SLE) in a Chinese Han population. Their work identifies nine new SLE susceptibility loci and reveals overlap in the spectrum of risk alleles shared between Chinese Han and European populations.

Jian-Wen Han
Hou-Feng Zheng
Xue-Jun Zhang
Research18 Oct 2009
Nature Genetics

Volume: 41, P: 1234-1237
Structural and free energy landscape of novel mutations in ribosomal protein S1 (rpsA) associated with pyrazinamide resistance

Muhammad Tahir Khan
Abbas Khan
Dong-Qing Wei
ResearchOpen Access16 May 2019
Scientific Reports

Volume: 9, P: 1-12
Author Correction: Characterization of rifampicin-resistant Mycobacterium tuberculosis in Khyber Pakhtunkhwa, Pakistan

Anwar Sheed Khan
Jody E. Phelan
Taj Ali Khan
Amendments and CorrectionsOpen Access19 Jul 2021
Scientific Reports

Volume: 11, P: 1
FoxO3 restricts liver regeneration by suppressing the proliferation of hepatocytes

Chi-Qian Liang
Deng-Cheng Zhou
Xu-Feng Qi
ResearchOpen Access24 Jun 2022
npj Regenerative Medicine

Volume: 7, P: 1-16
Characterization of rifampicin-resistant Mycobacterium tuberculosis in Khyber Pakhtunkhwa, Pakistan

Anwar Sheed Khan
Jody E. Phelan
Taj Ali Khan
ResearchOpen Access09 Jul 2021
Scientific Reports

Volume: 11, P: 1-10
Evolutionary and structural analysis of SARS-CoV-2 specific evasion of host immunity

Irfan Hussain
Nashaiman Pervaiz
Amir Ali Abbasi
ResearchOpen Access03 Dec 2020
Genes & Immunity

Volume: 21, P: 409-419
A comparative chemogenic analysis for predicting Drug-Target Pair via Machine Learning Approaches

Aman Chandra Kaushik
Aamir Mehmood
Dong-Qing Wei
ResearchOpen Access22 Apr 2020
Scientific Reports

Volume: 10, P: 1-11
Predicting protein-ligand interactions based on bow-pharmacological space and Bayesian additive regression trees

Li Li
Ching Chiek Koh
Dong-Qing Wei
ResearchOpen Access22 May 2019
Scientific Reports

Volume: 9, P: 1-12
Immunoinformatic and systems biology approaches to predict and validate peptide vaccines against Epstein–Barr virus (EBV)

Arif Ali
Abbas Khan
Dong-Qing Wei
ResearchOpen Access24 Jan 2019
Scientific Reports

Volume: 9, P: 1-12
A Study of the Dynamic Relation between Physiological Changes and Spontaneous Expressions

Fenglei Yang
Sijung Hu
Ping Shi
ResearchOpen Access01 Aug 2017
Scientific Reports

Volume: 7, P: 1-12

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WeiBI (web-based platform): Enriching integrated interaction network with increased coverage and functional proteins from genome-wide experimental OMICS data

Identification of novel inhibitors targeting Mycobacterium abscessus InhA through virtual screening, docking, and molecular dynamic simulations

Mesophasic organization of GABA_A receptors in hippocampal inhibitory synapses

A transformer-based model to predict peptide–HLA class I binding and optimize mutated peptides for vaccine design

Nano-particle mediated inhibition of Parkinson’s disease using computational biology approach

The PPI network analysis of mRNA expression profile of uterus from primary dysmenorrheal rats

scCobra allows contrastive cell embedding learning with ___domain adaptation for single cell data integration and harmonization

Immunoinformatics approaches to explore Helicobacter Pylori proteome (Virulence Factors) to design B and T cell multi-epitope subunit vaccine

Theoretical Studies of Intracellular Concentration of Micro-organisms’ Metabolites

Genome-wide association study in a Chinese Han population identifies nine new susceptibility loci for systemic lupus erythematosus

Structural and free energy landscape of novel mutations in ribosomal protein S1 (rpsA) associated with pyrazinamide resistance

Author Correction: Characterization of rifampicin-resistant Mycobacterium tuberculosis in Khyber Pakhtunkhwa, Pakistan

FoxO3 restricts liver regeneration by suppressing the proliferation of hepatocytes

Characterization of rifampicin-resistant Mycobacterium tuberculosis in Khyber Pakhtunkhwa, Pakistan

Evolutionary and structural analysis of SARS-CoV-2 specific evasion of host immunity

A comparative chemogenic analysis for predicting Drug-Target Pair via Machine Learning Approaches

Predicting protein-ligand interactions based on bow-pharmacological space and Bayesian additive regression trees

Immunoinformatic and systems biology approaches to predict and validate peptide vaccines against Epstein–Barr virus (EBV)

A Study of the Dynamic Relation between Physiological Changes and Spontaneous Expressions

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