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Showing 1–50 of 206 results
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  • A superconducting diode bridge based on superconducting diodes can function as a full-wave rectifier with an efficiency up to 42 ± 5%, and can offer alternating current to direct current signal conversion capabilities at frequencies up to 40 kHz.

    • Josep Ingla-Aynés
    • Yasen Hou
    • Jagadeesh S. Moodera
    Research
    Nature Electronics
    Volume: 8, P: 411-416
  • In Myeloiddysplastic syndromes, CEBPA mutations are linked to disease progression and AML. Here, the authors use somatic reprogramming and genome editing to generate isogenic cell lines from an MDS patient, identifying CEBPA bZIP ___domain disruption as causative for disease progression.

    • Ruba Almaghrabi
    • Alyahyawi Yara
    • Paloma Garcia
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-22
  • This study used fine-mapping to analyze genetic regions associated with bipolar disorder, identifying specific risk genes and providing new insights into the biology of the condition that may guide future research and treatment approaches.

    • Maria Koromina
    • Ashvin Ravi
    • Niamh Mullins
    ResearchOpen Access
    Nature Neuroscience
    Volume: 28, P: 1393-1403
  • The flagship paper of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium describes the generation of the integrative analyses of 2,658 cancer whole genomes and their matching normal tissues across 38 tumour types, the structures for international data sharing and standardized analyses, and the main scientific findings from across the consortium studies.

    • Lauri A. Aaltonen
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 82-93
  • With the generation of large pan-cancer whole-exome and whole-genome sequencing projects, a question remains about how comparable these datasets are. Here, using The Cancer Genome Atlas samples analysed as part of the Pan-Cancer Analysis of Whole Genomes project, the authors explore the concordance of mutations called by whole exome sequencing and whole genome sequencing techniques.

    • Matthew H. Bailey
    • William U. Meyerson
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-27
  • The authors undertake a global-scale, long-term analysis of trends in post-fire biomass recovery, examining the influence of fire severity and climatic drivers before and after 2010. They find that since 2001 forest recovery has been increasingly sensitive to fire severity.

    • Qiancheng Lv
    • Ziyue Chen
    • Qiao Wang
    Research
    Nature Ecology & Evolution
    Volume: 9, P: 980-992
  • Common variable immunodeficiency (CVID) is a prevalent primary immunodeficiency characterized by hypogammaglobulinemia, poor antibody responses, and enhanced susceptibility to infection. Here the authors examine CVID patients infected by SARS-CoV-2 and describe broad immune dysregulation, sustained type I IFN responses, altered B/T cell signaling, impaired NK cell differentiation, and persistent inflammasome activation.

    • Javier Rodríguez-Ubreva
    • Josep Calafell-Segura
    • Esteban Ballestar
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-21
  • Mismatch repair-deficient colorectal cancer clones adapt their mutation landscape by toggling homopolymer sequences in MutS homolog 3 (MSH3) and MutS homolog 6 (MSH6). This increases the subclonal mutation rate and clonal diversity, favoring immune escape and tumor growth.

    • Hamzeh Kayhanian
    • William Cross
    • Marnix Jansen
    ResearchOpen Access
    Nature Genetics
    Volume: 56, P: 1420-1433
  • Whole-genome sequencing data from more than 2,500 cancers of 38 tumour types reveal 16 signatures that can be used to classify somatic structural variants, highlighting the diversity of genomic rearrangements in cancer.

    • Yilong Li
    • Nicola D. Roberts
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 112-121
  • Endothelial cells in white adipose tissue are shown to produce polyamines, which regulate adipocyte lipolysis, thus demonstrating how local angiocrine signals contribute to healthy adipose tissue homeostasis.

    • Erika Monelli
    • Pilar Villacampa
    • Mariona Graupera
    Research
    Nature Metabolism
    Volume: 4, P: 327-343
  • In the first results from an ongoing global cancer screening data repository, screening program organization was better overall in Europe compared to other continents; however, there were substantial gaps in implementation across both high- and low-resource settings.

    • Li Zhang
    • Isabel Mosquera
    • Melanie Ann Layne
    ResearchOpen Access
    Nature Medicine
    Volume: 29, P: 1135-1145
  • A genome-wide association meta-analysis study of blood lipid levels in roughly 1.6 million individuals demonstrates the gain of power attained when diverse ancestries are included to improve fine-mapping and polygenic score generation, with gains in locus discovery related to sample size.

    • Sarah E. Graham
    • Shoa L. Clarke
    • Cristen J. Willer
    Research
    Nature
    Volume: 600, P: 675-679
  • Genome-wide association studies have uncovered several loci associated with diabetes risk. Here, the authors reanalyse public type 2 diabetes GWAS data to fine map 50 known loci and identify seven new ones, including one near ATGR2 on the X-chromosome that doubles the risk of diabetes in men.

    • Sílvia Bonàs-Guarch
    • Marta Guindo-Martínez
    • David Torrents
    ResearchOpen Access
    Nature Communications
    Volume: 9, P: 1-14
  • Major depressive disorder is a heterogeneous condition with varied presentation of symptoms, comorbidities, and related genetic factors. This study aimed to identify clusters of major depressive disorder-related longitudinal multimorbidity trajectories and to characterize the clusters using genetic and risk factor data.

    • Andras Gezsi
    • Sandra Van der Auwera
    • Gabriella Juhasz
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-18
  • Whole-genome sequencing, transcriptome-wide association and fine-mapping analyses in over 7,000 individuals with critical COVID-19 are used to identify 16 independent variants that are associated with severe illness in COVID-19.

    • Athanasios Kousathanas
    • Erola Pairo-Castineira
    • J. Kenneth Baillie
    ResearchOpen Access
    Nature
    Volume: 607, P: 97-103
  • Most genome-wide association studies assume an additive model, exclude the X chromosome, and use one reference panel. Here, the authors implement a strategy including non-additive models and find that the number of loci for age-related traits increases as compared to the additive model alone.

    • Marta Guindo-Martínez
    • Ramon Amela
    • David Torrents
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-14
  • Some cancer patients first present with metastases where the ___location of the primary is unidentified; these are difficult to treat. In this study, using machine learning, the authors develop a method to determine the tissue of origin of a cancer based on whole sequencing data.

    • Wei Jiao
    • Gurnit Atwal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • This ecological analysis using the Eurostat database estimated that summer 2022, the hottest summer on record, was associated with over 61,000 heat-related deaths across 35 countries in Europe, with the highest mortality rates in countries near the Mediterranean Sea.

    • Joan Ballester
    • Marcos Quijal-Zamorano
    • Hicham Achebak
    ResearchOpen Access
    Nature Medicine
    Volume: 29, P: 1857-1866
  • Prespecified exploratory genomic and transcriptomic profiling of tumor tissues and circulating tumor DNA from patients with BRAF-V600E-mutant metastatic colorectal cancer who participated in the phase 3 BEACON CRC trial identifies biomarkers of response and mechanisms of acquired resistance to treatment with the BRAF inhibitor encorafenib plus the anti-EGFR antibody cetuximab, with or without the MEK inhibitor binimetinib.

    • Scott Kopetz
    • Danielle A. Murphy
    • Josep Tabernero
    ResearchOpen Access
    Nature Medicine
    Volume: 30, P: 3261-3271
  • Understanding deregulation of biological pathways in cancer can provide insight into disease etiology and potential therapies. Here, as part of the PanCancer Analysis of Whole Genomes (PCAWG) consortium, the authors present pathway and network analysis of 2583 whole cancer genomes from 27 tumour types.

    • Matthew A. Reyna
    • David Haan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-17
  • Integrative analyses of transcriptome and whole-genome sequencing data for 1,188 tumours across 27 types of cancer are used to provide a comprehensive catalogue of RNA-level alterations in cancer.

    • Claudia Calabrese
    • Natalie R. Davidson
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 129-136
  • The authors present SVclone, a computational method for inferring the cancer cell fraction of structural variants from whole-genome sequencing data.

    • Marek Cmero
    • Ke Yuan
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • Single-cell genomic and transcriptomic analyses of longitudinal samples of patients with Richter syndrome reveal the presence and dynamics of clones driving transformation from chronic lymphocytic leukemia years before clinical manifestation

    • Ferran Nadeu
    • Romina Royo
    • Elías Campo
    ResearchOpen Access
    Nature Medicine
    Volume: 28, P: 1662-1671
  • An analysis of 24,202 critical cases of COVID-19 identifies potentially druggable targets in inflammatory signalling (JAK1), monocyte–macrophage activation and endothelial permeability (PDE4A), immunometabolism (SLC2A5 and AK5), and host factors required for viral entry and replication (TMPRSS2 and RAB2A).

    • Erola Pairo-Castineira
    • Konrad Rawlik
    • J. Kenneth Baillie
    ResearchOpen Access
    Nature
    Volume: 617, P: 764-768
  • The authors reconstruct high fidelity networks of protein-protein interactions between promoters and enhancers in prostate cancer and demonstrate the potential of such an analytical framework to obtain actionable insights into the disease and potential therapeutic targets.

    • Alexandros Armaos
    • François Serra
    • Gian Gaetano Tartaglia
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-17
  • There’s an emerging body of evidence to show how biological sex impacts cancer incidence, treatment and underlying biology. Here, using a large pan-cancer dataset, the authors further highlight how sex differences shape the cancer genome.

    • Constance H. Li
    • Stephenie D. Prokopec
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-24
  • Analysis of human tumor datasets shows that all features that appear significantly associated with immunotherapy response and survival may be collapsed into five latent factors: tumor mutation burden, T cell effective infiltration, TGF-β activity in the microenvironment, prior treatment and tumor proliferative potential.

    • Joseph Usset
    • Axel Rosendahl Huber
    • Nuria Lopez-Bigas
    ResearchOpen Access
    Nature Genetics
    Volume: 56, P: 2112-2120
  • Analysis of cancer genome sequencing data has enabled the discovery of driver mutations. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium the authors present DriverPower, a software package that identifies coding and non-coding driver mutations within cancer whole genomes via consideration of mutational burden and functional impact evidence.

    • Shimin Shuai
    • Federico Abascal
    • Christian von Mering
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-12
  • Evolution of osmoregulation allowed photosynthetic organisms to transform the whole biosphere. Leveraging high-throughput techniques in the freshwater alga Chlamydomonas reinhardtii, the authors uncover evolutionary conservation and divergence of osmoregulatory pathways within the green lineage.

    • Josep Vilarrasa-Blasi
    • Tamara Vellosillo
    • José R. Dinneny
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-16
  • Exome-sequencing analyses of a large cohort of patients with type 2 diabetes and control individuals without diabetes from five ancestries are used to identify gene-level associations of rare variants that are associated with type 2 diabetes.

    • Jason Flannick
    • Josep M. Mercader
    • Michael Boehnke
    ResearchOpen Access
    Nature
    Volume: 570, P: 71-76
  • Common variable immunodeficiency (CVID) is the most prevalent primary immunodeficiency. Here the authors perform single-cell omics analyses in CVID-discordant monozygotic twins and show epigenetic and transcriptional alterations associated with activation in memory B cells.

    • Javier Rodríguez-Ubreva
    • Anna Arutyunyan
    • Esteban Ballestar
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-18
  • Analysis of whole-genome sequencing data across 2,658 tumors spanning 38 cancer types shows that chromothripsis is pervasive, with a frequency of more than 50% in several cancer types, contributing to oncogene amplification, gene inactivation and cancer genome evolution.

    • Isidro Cortés-Ciriano
    • Jake June-Koo Lee
    • Christian von Mering
    ResearchOpen Access
    Nature Genetics
    Volume: 52, P: 331-341
  • Analyses of 2,658 whole genomes across 38 types of cancer identify the contribution of non-coding point mutations and structural variants to driving cancer.

    • Esther Rheinbay
    • Morten Muhlig Nielsen
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 102-111
  • The characterization of 4,645 whole-genome and 19,184 exome sequences, covering most types of cancer, identifies 81 single-base substitution, doublet-base substitution and small-insertion-and-deletion mutational signatures, providing a systematic overview of the mutational processes that contribute to cancer development.

    • Ludmil B. Alexandrov
    • Jaegil Kim
    • Christian von Mering
    ResearchOpen Access
    Nature
    Volume: 578, P: 94-101
  • Van Leeuwen and colleagues demonstrate that chimpanzees use social learning to acquire a skill they failed to innovate, supporting the hypothesis that social learning is necessary for acquiring complex skills after initial innovation.

    • Edwin J. C. van Leeuwen
    • Sarah E. DeTroy
    • Josep Call
    ResearchOpen Access
    Nature Human Behaviour
    Volume: 8, P: 891-902
  • Myoglobin is a hemeprotein that reversibly binds oxygen and gives muscle its red color. Here, the authors report a genetic variant in the MB gene that associates with myoglobinopathy, an autosomal dominant progressive myopathy, and altered oxygen binding properties of the mutant protein.

    • Montse Olivé
    • Martin Engvall
    • Nigel G. Laing
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-14