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Yeasts are exposed to oxidative stress during routine metabolism, bioproduction, and interactions with other organisms. Here, the authors use a machine learning classifier to identify genes that are predictive of resistance to oxidative stress across diverse yeast species.

Cell Neural Networks on Spatial Transcriptomics (CellNEST) deciphers patterns of communication between cells in spatially resolved transcriptomics data and can detect both signals between individual cells and relay networks of communication.

JWST observations suggest that both pebbles and planetesimals played an important role in forming the giant exoplanet WASP-121 b beyond the H₂O ice line. They also indicate that strong vertical mixing likely drives the nightside atmospheric chemistry.

Activity in the striatum is necessary for trial-to-trial improvements in learning sensory–motor tasks but not memory recall.

Inflammatory monocytes in the brain meninges promote stress-induced fear behaviour, and the pathways involved can be modulated using psychedelic compounds.

Systematic analysis from the Global Burden of Disease study reported that, despite global improvements from 1990 to 2021, dietary iron deficiency-associated disease burden remains high in women, children and residents in low socio-demographic index countries.

Studying the asymmetry in the pattern of Neanderthal introgression in modern human genomes between individuals of East Asian and European ancestry, the authors show recurrent gene flow from Neanderthals into modern humans.

The learning algorithms that produce social behavior are unknown. Here the authors show that artificial fish, modeled via embodied deep neural networks, learn the same social behaviors as real fish, showing deep neural networks are viable models of social learning.

Past human land modification in the Amazon has resulted in nutrient- and carbon-rich soil deposits of great cultural and environmental value. A new remote-sensing and machine-learning approach reveals the extent of Amazonian dark earth and its potentially substantial carbon reservoir.

Viral rebound has been observed following treatment with Paxlovid. Here the authors develop a mathematical model for viral-immune dynamics and nirmatrelvir pharmacokinetics and suggest that early treatment preserves susceptible cells and blunts the innate immune response without fully eliminating infection. They project that treatment extension for 10 days may overcome this effect.

To understand the potential for seaweed as a Blue Carbon strategy, the authors quantify carbon burial under 20 globally distributed seaweed farms. They attribute an average of 1.06 ± 0.74 tCO₂e ha⁻¹ yr⁻¹ to seaweed farms, and show increased accumulation of carbon with farm age.

A consensus cell type atlas for the fly brain provides both an intellectual framework and open-source toolchains for brain-scale comparative connectomics.

The US COVID-19 Scenario Modeling Hub produced medium to long term projections based on different epidemic scenarios. In this study, the authors evaluate 14 rounds of projections by comparing them to the epidemic trajectories that occurred, and discuss lessons learned for future similar projects.

Senegal has initiated a national sentinel surveillance program for malaria parasite genetics. Here, the authors report data from the first year of the program and use it to investigate local malaria incidence, patterns of transmission, and genetic loci under selection.

Multi-omics data are readily integrated using quartet reference materials.

Observations of a 3-million-year-old pre-main-sequence star with a misaligned disk reveal a giant orbiting planet; the system is ideal for studying the early formation and migration of planets.

Changes in agricultural practices have led to the expansion of tree plantations across the tropics, but this expansion is poorly characterized. Nearly 7 million unique patches of observed tree cover gain are classified through satellite imagery to report on tropical tree plantation expansion between 2000 and 2012.

This work leverages a new diet database and six long term monitoring efforts of 361 taxa to build comparable pre- and post-heatwave ecosystem models. The study provides empirical demonstration of changes in ecosystem-wide patterns of energy flux and biomass in response to marine heatwaves.

Analysis of data collected from mice learning a trace conditioning paradigm shows that phasic dopamine activity in the brain can regulate direct learning of behavioural policies, and dopamine sets an adaptive learning rate rather than an error-like teaching signal.

The divisome is a macromolecular machine composed of more than 30 proteins that controls cell wall constriction during bacterial cell division. Here, the authors provide insights into the structure and dynamics of the divisome core complex using a combination of structure prediction, molecular dynamics simulation, single-molecule imaging, and mutagenesis.

Specialized neural networks and general large language models outperform individual humans at predicting personality questionnaire item correlations, but specialized models and aggregated expert predictions achieve the highest accuracy on most measures.

Proximity ferroelectricity is reported in wurtzite heterostructures, which enables polarization reversal in wurtzites without the chemical or structural disorder that accompanies elemental substitution.

A large-scale field intervention experiment on 23,377 US Facebook users during the 2020 presidential election shows that reducing exposure to content from like-minded social media sources has no measurable effect on political polarization or other political attitudes and beliefs.

An analysis of 24,202 critical cases of COVID-19 identifies potentially druggable targets in inflammatory signalling (JAK1), monocyte–macrophage activation and endothelial permeability (PDE4A), immunometabolism (SLC2A5 and AK5), and host factors required for viral entry and replication (TMPRSS2 and RAB2A).

A new algorithm enables scalable and iterative integration of single-cell datasets.

Activation of the mechanistic target of rapamycin (mTOR) is important in the metabolic function of proinflammatory T cells in autoimmunity. Here the authors characterise how Rab4A is involved with CD98 and endosome recycling which subsequently affects mTOR activation, autoimmunity and T cell expansion.

A genomic constraint map for the human genome constructed using data from 76,156 human genomes from the Genome Aggregation Database shows that non-coding constrained regions are enriched for regulatory elements and variants associated with complex diseases and traits.

A curvature-sensing antiviral peptide is repurposed to disrupt tumour-derived exosomes and used in combination with immune checkpoint blockade cancer therapy.

Here, the authors determine the structural basis of how SGO1 protects centromeric cohesin from WAPL-mediated release until the kinetochores and the microtubules have formed functional attachments. In addition, they show that SGO1 and CTCF bind cohesin in a similar manner, suggesting a potential universal mechanism of cohesin control.

Adults and children can represent the relative difficulty of discriminating two populations and recognize that larger samples are required for populations with greater overlap. This suggests that they have foundations for ‘intuitive power analyses’.

Three-dimensional imaging of the fetal heart and quantification of blood flow in the surrounding vessels is very challenging because the heart is small and the fetus is free to move in the womb. Here, the authors demonstrate motion-corrected 4D flow MRI of the whole fetal heart and major vessels.

TOI-500 hosts at least four planets, the innermost of which is an Earth-sized ultra-short-period body with a density similar to Earth. The architecture of the TOI-500 system can be explained by a slow, secular, low-eccentricity migration scenario.

Runjun Kumar, S. Joshua Swamidass and Ron Bose present an unsupervised parsimony-guided method, ParsSNP, for prioritizing candidate cancer driver mutations. They apply ParsSNP to a gastric cancer data set and predict potential driver mutations not detected by other methods, including truncations in known tumor-suppressor genes and previously confirmed drivers.

During human embryonic development, haematopoietic stem cells of the foetal liver undergo expansion, while retaining engraftment capacity. Here the authors apply CITE-seq to profile single cells from a human foetal liver, identifying a molecular signature of engraftment potential

How do concepts of mental life vary across cultures? Weisman et al. show that a distinction between cognition and bodily sensation is present across five diverse cultures, but the status of social and emotional mental states is variable.

Scientists fear that systemic incentives lead to poor science. Stewart and Plotkin use modelling to show how a scientific process emphasizing the use of theory to select hypotheses can allow good science to thrive in the face of pressure to publish.

Selectivity is a key obstacle in drug development. A new study describes how “peptide stapling,” a technique for making peptide α-helices more potent and cell permeable, allows the design of MCL-1 inhibitors with extraordinary selectivity.

Determining progress in adaptation to climate change is challenging, yet critical as climate change impacts increase. A stocktake of the scientific literature on implemented adaptation now shows that adaptation is mostly fragmented and incremental, with evidence lacking for its impact on reducing risk.

This study identified a new class of skeletal stem cells in the endosteal space of bone marrow, which are abundant in young bone marrow, express Fgfr3 with osteoblast-chondrocyte transitional identities and can turn into bone tumor-making cells.

Mycorrhizas—mutualistic relationships formed between fungi and most plant species—are functionally linked to soil carbon stocks. Here the authors map the global distribution of mycorrhizal plants and quantify links between mycorrhizal vegetation patterns and terrestrial carbon stocks.

The association between Central Atlantic Magmatic Province (CAMP) eruption volatiles and the end-Triassic mass extinction remains ambiguous. Here, the authors present mercury and palaeontological evidence from the same archive and show that significant biotic recovery did not begin until CAMP eruptions ceased.

Human intracranial recordings reveal two distinct neural processes underlying anticipatory modulation of response times.

Scorpio enhances genomic language models with contrastive learning and hierarchical sampling to improve classification, generalization, and biological representation, enabling transferable embeddings to other domains.

Mosquitoes are nearly eradicated in three suburbs of California using accurately sorted sterile male mosquitoes.

Analysing whole-genome sequences from 68 rattlesnakes, the authors show a role of long-term balancing selection in maintaining diversity of multiple venom gene families and find reduced selective interference of venom genes with neighbouring loci.

Monoclonal antibodies are highly effective therapeutics that can be delivered as proteins or encoded DNA or mRNA. Here the authors develop lipid nanoparticle-formulated nucleoside-modified mRNA encoding an HIV-1 neutralizing antibody and see sustained and protective antibody levels in treated mice.