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Showing 1–50 of 455 results
Advanced filters: Author: Matthias Fischer Clear advanced filters
  • During synthesis, modification and maturation of the ribosomal RNA, correct subdomain folding without additional guidance poses a major challenge. Here, the authors observe the snR30 H/ACA snoRNP forming a “satellite particle” with the 90S, the earliest known pre-ribosome, where localized structural interactions guide its independent folding.

    • Paulina Fischer
    • Matthias Thoms
    • Roland Beckmann
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • Proteomic data from natural isolates of Saccharomyces cerevisiae provide insight into how these cells tolerate aneuploidy (an imbalance in the number of chromosomes), and reveal differences between lab-engineered aneuploids and diverse natural yeasts.

    • Julia Muenzner
    • Pauline Trébulle
    • Markus Ralser
    ResearchOpen Access
    Nature
    Volume: 630, P: 149-157
  • Kinase inhibitors are key in cancer therapy, but resistance limits their efficacy. Here, the authors develop SPIED-DIA, a phosphoproteomics method enhancing detection of key phosphorylation sites. They reveal a synergistic MEK-JNK signaling response in colorectal cancer cells, suggesting a potential therapeutic strategy.

    • Mirjam van Bentum
    • Bertram Klinger
    • Matthias Selbach
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • Ru isotopes are proposed as tracers for core–mantle interaction on Earth, and anomalies for ocean island basalts from Hawaii are reported that have higher ε100Ru than the ambient mantle.

    • Nils Messling
    • Matthias Willbold
    • Dennis Geist
    ResearchOpen Access
    Nature
    Volume: 642, P: 376-380
  • Trees come in all shapes and size, but what drives this incredible variation in tree form remains poorly understood. Using a global dataset, the authors show that a combination of climate, competition, disturbance and evolutionary history shape the crown architecture of the world’s trees and thereby constrain the 3D structure of woody ecosystems.

    • Tommaso Jucker
    • Fabian Jörg Fischer
    • Niklaus E. Zimmermann
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-16
  • TGF-β family cytokines control essential cell fate decisions via receptor regulated SMAD (R-SMAD) transcription factors. Here the authors identify an inner nuclear membrane phosphatase complex that dephosphorylates R-SMADs to inactivate TGF-β signaling.

    • Zhe Ji
    • Wing-Yan Skyla Siu
    • Pedro Carvalho
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-14
  • Acinic cell carcinoma (AciCC) is a rare salivary gland carcinoma that is poorly understood. Here the authors perform genomic, transcriptomic and epigenomic profiling of AciCC and find highly recurrent and specific rearrangements [t(4;9)(q13;q31)], which lead to enhancer hijacking that activates oncogenic transcription factor NR4A3.

    • Florian Haller
    • Matthias Bieg
    • Abbas Agaimy
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-13
  • The function of VCP/p97 AAA-ATPase cofactor UBXD1 and its UBX ___domain has been elusive. Here the authors show that the extended UBXD1 UBX ___domain is located at the p97 pore exit where it binds ubiquitin, suggesting that UBXD1 receives unfolded substrates and hands them off for down-stream processing.

    • Mike Blueggel
    • Alexander Kroening
    • Christine Beuck
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-18
  • Extensive lysosomal damage can result in cell death but how limited protease leakage affects cytoplasmic organelles in viable cells is not well understood. Here the authors show that limited lysosomal damage leads to changes in the mitochondrial proteome and the modulation of macrophage immunometabolism.

    • Claudio Bussi
    • Tiaan Heunis
    • Maximiliano G. Gutierrez
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-22
  • Characterizing proteases in their native environment is still challenging. Here, the authors develop a proteomics workflow for analyzing protease-specific peptides from cell lysates in 96-well format, providing mechanistic insights into blood proteases and enabling the prediction of protease substrates.

    • Federico Uliana
    • Matej Vizovišek
    • Ruedi Aebersold
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-18
  • A fundamental step in membrane protein biogenesis is their integration into the lipid bilayer with a defined orientation of each transmembrane segment. Here, the authors show that mutations in connexin 32 can cause failures in membrane integration which is detected by the ER chaperone machinery.

    • João P. L. Coelho
    • Matthias Stahl
    • Matthias J. Feige
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-10
  • Early development is controlled by maternally deposited mRNAs and the RNA-binding proteins (RBPs) that regulate them. Here the authors describe the identification of a large number of RBPs bound to polyadenylated RNAs in Drosophilaembryos before and after the maternal-to-zygotic transition, revealing changes in RBPs activity during development.

    • Vasiliy O. Sysoev
    • Bernd Fischer
    • Anne Ephrussi
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-11
  • Conversion of one-carbon feedstocks to more complex structures is vital for the production of bulk chemicals. Here, the authors report a highly selective method for the conversion of carbon monoxide to ethylene glycol by means of an oxamide intermediate.

    • Kaiwu Dong
    • Saravanakumar Elangovan
    • Matthias Beller
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-7
  • Inbreeding depression has been observed in many different species, but in humans a systematic analysis has been difficult so far. Here, analysing more than 1.3 million individuals, the authors show that a genomic inbreeding coefficient (FROH) is associated with disadvantageous outcomes in 32 out of 100 traits tested.

    • David W Clark
    • Yukinori Okada
    • James F Wilson
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-17
  • Despite some well-characterized functions in cancer, the impact of most long non-coding RNAs remains unknown. Here, the authors discover the lncRNA lincNMR which is upregulated in cancer and drives cell proliferation by interacting with YBX1 and controlling nucleotide metabolism.

    • Minakshi Gandhi
    • Matthias Groß
    • Sven Diederichs
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-15
  • Proteomic, transcriptomic, and genomic analysis has shown osteosarcoma (OS) to be a complex and heterogenous disease but revealed little about its carcinogenesis or potential therapeutic targets. Here, the authors profile the RNA interactome, transcriptome and proteome of cells derived from OS patients, identifying a targetable vulnerability to translation inhibition.

    • Yang Zhou
    • Partho Sarothi Ray
    • Andreas E. Kulozik
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-22
  • Medulloblastomas (MBs) are highly heterogeneous paediatric brain tumours that remain challenging to treat. Here, the authors integrate proteomics, epigenomics, transcriptomics and post-translational modification analyses to find molecular subgroups and potential therapeutic targets in MB tumours.

    • Shweta Godbole
    • Hannah Voß
    • Julia E. Neumann
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-24
  • Methylmalonic acidemia is an inherited metabolic disease caused by loss or mutation of the enzyme MMUT. Here the authors use cell and animal models to show that MMUT mutations lead to defective mitophagy and stress in kidney cells, contributing to the pathogenesis in methylmalonic acidemia patients.

    • Alessandro Luciani
    • Anke Schumann
    • Olivier Devuyst
    ResearchOpen Access
    Nature Communications
    Volume: 11, P: 1-21
  • In order to use early, non-noble transition metals in homogeneous catalysis, complex ligands are typically needed, offsetting the benefits of inexpensive metals. Here the authors show that a simple manganese complex can be used in the hydrogenation of N-heteroarenes, without the need for additional ligands.

    • Veronica Papa
    • Yixuan Cao
    • Matthias Beller
    Research
    Nature Catalysis
    Volume: 3, P: 135-142
  • Here, the authors present the cryo-EM structure of in vitro amyloid fibrils from recombinant SAA1.1 protein that were formed by seeding with fibrils purified from systemic AA amyloidosis tissue. This in vitro fibril structure resembles the structure of the ex vivo fibrils but differs from unseeded in vitro fibrils. These findings show that fibril morphologies can be propagated in vitro by seeding.

    • Thomas Heerde
    • Matthies Rennegarbe
    • Marcus Fändrich
    ResearchOpen Access
    Nature Communications
    Volume: 13, P: 1-8
  • Here, Miranda-Cervantes et al. identified pantothenate kinase 4 (PanK4) as a key regulator of muscle metabolism. Deleting PanK4 impairs fatty acid oxidation and glucose uptake, leading to glucose intolerance, while increasing PanK4 enhances glucose metabolism, highlighting its potential in promoting metabolic health.

    • Adriana Miranda-Cervantes
    • Andreas M. Fritzen
    • Maximilian Kleinert
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15
  • Dysfunction in insulin secretion is a main driver of type 2 diabetes development. Here the authors monitor phosphoproteome modulation in cells stimulated with glucose and treated with drugs affecting glucose-mediated insulin secretion to reveal phosphorylation sites implicated in insulin secretion control and gene expression regulation.

    • Francesca Sacco
    • Sean J. Humphrey
    • Matthias Mann
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-13
  • Loading of antigenic peptides onto MHC-I is essential for adaptive immunity and requires the protein Tapasin. Here, the authors demonstrate that Tapasin levels are controlled by the RNF185/MBRL ERAD complex and that this process regulates MHC-I surface expression.

    • Michael L. van de Weijer
    • Krishna Samanta
    • Pedro Carvalho
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-14
  • Systemic AA amyloidosis is a protein misfolding disease caused by the formation of amyloid fibrils from serum amyloid A (SAA) protein. Here, the authors present the cryo-EM structures of AA amyloid fibrils isolated from mouse tissue and in vitro formed fibrils, which differ in their structures and they also show that the ex vivo fibrils are more resistant to proteolysis than the in vitro fibrils and propose that pathogenic amyloid fibrils might originate from proteolytic selection.

    • Akanksha Bansal
    • Matthias Schmidt
    • Marcus Fändrich
    ResearchOpen Access
    Nature Communications
    Volume: 12, P: 1-9
  • A combination of proteomics and structural analyses reveals the assembly mechanism of transcription factor TFIID in human cells and identifies the chaperonin CCT as a checkpoint in the process.

    • Simona V. Antonova
    • Matthias Haffke
    • Imre Berger
    Research
    Nature Structural & Molecular Biology
    Volume: 25, P: 1119-1127
  • Leucine-rich repeat (LRR) domains are commonly present in immune regulatory proteins. Here the authors show that LRR exonic modularity and alternative splicing of an LRR-containing protein, NLRP3, modulate the ratio of functional/afunctional NLRP3 isoforms to instill a stochastic regulation of NLRP3-mediated inflammation and innate immunity.

    • Florian Hoss
    • James L. Mueller
    • Eicke Latz
    ResearchOpen Access
    Nature Communications
    Volume: 10, P: 1-13
  • In hepatocellular carcinoma driven by non-alcoholic steatohepatitis, aberrant T cell activation and impaired immune surveillance seem to make hepatocellular carcinoma less responsive to anti-PD1 or anti-PDL1 immunotherapy.

    • Dominik Pfister
    • Nicolás Gonzalo Núñez
    • Mathias Heikenwalder
    ResearchOpen Access
    Nature
    Volume: 592, P: 450-456
  • Type 2 diabetes (T2D) is characterized by hyperglycemia caused by insufficient insulin release from pancreatic islets, often in combination with insulin resistance. Here the authors present an epigenetic case-control study in human pancreatic islets revealing changes that contribute to type 2 diabetes development, e.g., epigenetic downregulation of RHOT1.

    • Tina Rönn
    • Jones K. Ofori
    • Charlotte Ling
    ResearchOpen Access
    Nature Communications
    Volume: 14, P: 1-21
  • Inflammasome assembly promotes the cleavage and oligomerisation of gasdermin D (GSDMD) and subsequent pore formation. Here the authors raise nanobodies to human gasdermin and characterize the pore formation process mediated by GSDMD and how antagonistic nanobodies prevent pyroptosis.

    • Lisa D. J. Schiffelers
    • Yonas M. Tesfamariam
    • Florian I. Schmidt
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-18
  • TFIID is an essential transcription factor complex that controls the expression of most protein-coding genes in eukaryotes. Here the authors identify and characterize a complex containing TAF2, TAF8 and TAF10, which assembles in the cytoplasm before integration into the nuclear holo–TFIID complex.

    • Simon Trowitzsch
    • Cristina Viola
    • Imre Berger
    ResearchOpen Access
    Nature Communications
    Volume: 6, P: 1-14
  • Targeted protein degradation uses small molecules to recruit proteins to E3 ligases to induce their ubiquitylation and degradation, but only a few human E3 ligases are amenable to this strategy. Here, the authors identify and characterize SP3N, a specific degrader of the prolyl isomerase FKBP12, containing an FKBP12 ligand appended with a flexible alkylamine tail that is metabolized to an active aldehyde species which recruits the SCFFBXO22 ligase for FKBP12 degradation.

    • Chrysanthi Kagiou
    • Jose A. Cisneros
    • Georg E. Winter
    ResearchOpen Access
    Nature Communications
    Volume: 15, P: 1-14
  • Alborzinia et al. report that MYCN-amplified neuroblastoma undergoes ferroptosis in the absence of intracellular cysteine, suggesting a combination of cysteine depletion and concomitant GPX4 inactivation as a potential therapeutic approach.

    • Hamed Alborzinia
    • Andrés F. Flórez
    • Frank Westermann
    ResearchOpen Access
    Nature Cancer
    Volume: 3, P: 471-485
  • Inhibition of YBX1, a downstream target of the Janus kinase JAK2, sensitizes myeloproliferative neoplasm cells to JAK and could provide a means to eradicate such cells in human haematopoietic cancers.

    • Ashok Kumar Jayavelu
    • Tina M. Schnöder
    • Florian H. Heidel
    Research
    Nature
    Volume: 588, P: 157-163
  • Hydrogen borrowing is an attractive method for C-N bond formation - avoiding multiple alkylation products and reducing waste - but often is carried out with noble metals. Here the authors show that a manganese catalyst allows the selective N-alkylation of amines with alcohols.

    • Saravanakumar Elangovan
    • Jacob Neumann
    • Matthias Beller
    ResearchOpen Access
    Nature Communications
    Volume: 7, P: 1-8
  • The conversion of alkenes to esters is performed on a large scale worldwide, but relies on the use of toxic and flammable carbon monoxide. Here, the authors show a catalytic system where carbon dioxide—normally unreactive, but cheap and abundant—can be employed instead.

    • Lipeng Wu
    • Qiang Liu
    • Matthias Beller
    Research
    Nature Communications
    Volume: 5, P: 1-6