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Showing 1–9 of 9 results
Advanced filters: Author: Shanka Subhra Mondal Clear advanced filters

  • The Connectome Annotation Versioning Engine (CAVE) is a platform for proofreading, annotating and analyzing datasets reaching the petascale. Currently, CAVE is used for electron microscopy datasets, but it can potentially be used for other large-scale datasets.

    • Sven Dorkenwald
    • Casey M. Schneider-Mizell
    • Forrest Collman
    ResearchOpen Access
    Nature Methods
    Volume: 22, P: 1112-1120

  • Neural Decomposition (NEURD) is a software package that decomposes neuronal data from high-resolution electron microscopy volumes into feature-rich graph representations to facilitate analysis for neuroscience research.

    • Brendan Celii
    • Stelios Papadopoulos
    • Jacob Reimer
    ResearchOpen Access
    Nature
    Volume: 640, P: 487-496

  • Excitatory neurons in the neocortex exhibit considerable morphological diversity, yet their organizational principles remain a subject of ongoing research. Here, the authors use unsupervised learning to show that most excitatory neuron morphologies in the mouse visual cortex form a continuum, with notable exceptions in deeper layers.

    • Marissa A. Weis
    • Stelios Papadopoulos
    • Alexander S. Ecker
    ResearchOpen Access
    Nature Communications
    Volume: 16, P: 1-15

  • Using volumetric electron microscopy, the authors map and analyze the structure of cortical inhibition with synaptic resolution across a column of visual cortex.

    • Casey M. Schneider-Mizell
    • Agnes L. Bodor
    • Nuno Maçarico da Costa
    ResearchOpen Access
    Nature
    Volume: 640, P: 448-458

  • The MICrONS mouse visual cortex dataset shows that neurons with similar response properties preferentially connect, a pattern that emerges within and across brain areas and layers, and independently emerges in artificial neural networks where these ‘like-to-like’ connections prove important for task performance.

    • Zhuokun Ding
    • Paul G. Fahey
    • Andreas S. Tolias
    ResearchOpen Access
    Nature
    Volume: 640, P: 459-469

  • Dense calcium imaging combined with co-registered high-resolution electron microscopy reconstruction of the brain of the same mouse provide a functional connectomics map of tens of thousands of neurons of a region of the primary cortex and higher visual areas.

    • J. Alexander Bae
    • Mahaly Baptiste
    • Chi Zhang
    ResearchOpen Access
    Nature
    Volume: 640, P: 435-447