Stochastic networks articles from across Nature Portfolio

Latest Research and Reviews

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  Graphical model analysis of subjective well-being and various factors in Japanese adults from the Iwaki cross-sectional study

  • Shunji Sakai
  • Akito Onoda
  • Chie Furuta

  ResearchOpen Access25 Apr 2025 Scientific Reports

  Volume: 15, P: 14570
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  Spatiotemporal modeling quantifies cellular contributions to uptake of Aspergillus fumigatus in the human lung

  Stochastic computer model of A. fumigtatus lung infections based on a bottom-up ODE approach, that incorporates wet lab data linking conidial swelling to its recognition and uptake, investigates the contribution of the lung epithelium and the alveolar macrophages to fungal clearance.

  • Christoph Saffer
  • Sandra Timme
  • Marc Thilo Figge

  ResearchOpen Access04 Dec 2024 Communications Biology

  Volume: 7, P: 1615
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  Holimap: an accurate and efficient method for solving stochastic gene network dynamics

  Understanding gene-gene interactions is key to decoding cellular processes. Here, authors introduce Holimap, a method that accurately and rapidly predicts gene expression dynamics by approximating complex regulatory networks with simpler models.

  • Chen Jia
  • Ramon Grima

  ResearchOpen Access02 Aug 2024 Nature Communications

  Volume: 15, P: 6557
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  A stochastic vs deterministic perspective on the timing of cellular events

  Cells exhibit remarkable temporal precision in regulating their internal states. Here, by solving stochastic first passage time problems for key molecular processes Ham, Coomer et al. shed light on how cells achieve this precision.

  • Lucy Ham
  • Megan A. Coomer
  • Michael P. H. Stumpf

  ResearchOpen Access20 Jun 2024 Nature Communications

  Volume: 15, P: 5286
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  Emergence of a mutual-growth mechanism in networks evolved by social preference based on indirect utility

  • Jong-Hyeok Lee
  • Ken-ichiro Ogawa

  ResearchOpen Access07 Dec 2023 Scientific Reports

  Volume: 13, P: 21680
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  Integrating glycolysis, citric acid cycle, pentose phosphate pathway, and fatty acid beta-oxidation into a single computational model

  • Sylwester M. Kloska
  • Krzysztof Pałczyński
  • Tadeusz A. Wysocki

  ResearchOpen Access02 Sept 2023 Scientific Reports

  Volume: 13, P: 14484