Extended Data Fig. 7: Comparison between embeddings generated by CellLENS and SpaGCN on CODEX mouse spleen data. | Nature Immunology

Extended Data Fig. 7: Comparison between embeddings generated by CellLENS and SpaGCN on CODEX mouse spleen data.

From: CellLENS enables cross-___domain information fusion for enhanced cell population delineation in single-cell spatial omics data

Extended Data Fig. 7

While initially designed for spot-level spatial-omics data, SpaGCN could run on the whole CODEX mouse spleen data ( ~ 50k cells). We compared the cell type delineation ability between the embeddings from CellLENS and SpaGCN. The figure setup is the same as described in Fig. 2. SpaGCN failed to identify the various B cell subpopulations captured by CellLENS.

Back to article page