Fig. 1: High-quality telomere-to-telomere (T2T) genome assembly of Eleocharis dulcis and comparative genomic analysis. | Scientific Data

Fig. 1: High-quality telomere-to-telomere (T2T) genome assembly of Eleocharis dulcis and comparative genomic analysis.

From: Telomere-to-telomere genome assembly of Eleocharis dulcis and expression profiles during corm development

Fig. 1

(A) The Hi-C heatmap of chromosome interactions in E. dulcis genome. (B) The characteristics of the assembled E. dulcis genome. The tracks from outer to inner represent the gene density, repeat sequence density and GC content according to 50kbp windows. (C) A phylogenetic tree was constructed based on 634 single copy orthologues retrieved from 11 species. Arabidopsis thaliana and Vitis vinifera were chosen as outgroups. The red and green numbers on the branches represent the contracted and expanded gene families, respectively. Numbers at each node represent the inferred divergence times between species (millions of years). Red dots represent calibration ages between Rhynchospora breviuscula and Juncus effusus; R. breviuscula and Oryza sativa; R. breviuscula and Asparagus officinalis; A. officinalis and Vitis vinifera; V. vinifera and Arabidopsis thaliana. Calibration ages were obtained from the Timetree database (http://www.timetree.org/).

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