Table 4 Repeat element annotation.
From: Genome assembly of a diversity panel of Chenopodium quinoa
Genotype | 03-21-072RM | CHEN-199 | CHEN-90 | D-10126 | D-12282 | Javi | PI-614919 | Regalona | Average |
|---|---|---|---|---|---|---|---|---|---|
Class | |||||||||
LTR | |||||||||
Copia | 7.89% | 8.53% | 8.06% | 7.93% | 8.04% | 7.77% | 8.65% | 8.42% | 8.16% |
Gypsy | 29.21% | 30.25% | 35.25% | 30.84% | 35.17% | 28.41% | 36.76% | 35.07% | 32.62% |
unknown | 10.91% | 9.23% | 10.39% | 9.71% | 9.91% | 11.40% | 9.21% | 10.72% | 10.19% |
TIR | |||||||||
CACTA | 2.17% | 2.07% | 1.88% | 2.18% | 2.00% | 1.65% | 2.16% | 1.51% | 1.95% |
Mutator | 5.90% | 5.85% | 2.53% | 5.73% | 2.76% | 2.79% | 2.28% | 2.76% | 3.83% |
PIF_Harbinger | 0.69% | 0.83% | 0.74% | 0.83% | 0.84% | 0.68% | 0.73% | 0.79% | 0.77% |
Tc1_Mariner | 2.49% | 2.39% | 2.78% | 2.51% | 2.71% | 2.65% | 2.85% | 2.58% | 2.62% |
hAT | 1.68% | 1.72% | 1.75% | 1.75% | 1.76% | 1.71% | 1.79% | 1.69% | 1.73% |
nonTIR | |||||||||
helitron | 5.45% | 5.08% | 4.97% | 4.96% | 4.51% | 4.86% | 4.24% | 5.60% | 4.96% |
Total | 66.38% | 65.96% | 68.35% | 66.43% | 67.70% | 61.90% | 68.67% | 69.13% | 66.82% |
