Table 5 Repeat sequences in sorghum 654-T2T assembly.
From: A telomere-to-telomere genome assembly of Chinese grain sorghum 654
Type | Main repeats | Elements | Length (bp) | Percentage |
|---|---|---|---|---|
Interspersed repeats | LINE | 9,947 | 6,573,665 | 0.90% |
SINE | 4,113 | 602,665 | 0.08% | |
LTR/Copia | 31,223 | 41,225,423 | 5.66% | |
LTR/Gypsy | 114,329 | 283,909,278 | 38.96% | |
DNA/CMC-EnSpm | 36,242 | 25,596,044 | 3.51% | |
DNA/MULE-MuDR | 14,201 | 5,489,301 | 0.75% | |
DNA/PIF-Harbinger | 94,219 | 20,781,512 | 2.85% | |
DNA/TcMar-Stowaway | 34,197 | 5,737,800 | 0.79% | |
Unclassified | 28,624 | 5,833,770 | 0.80% | |
Tandem repeats | Satellites | 6,788 | 41,887,900 | 5.75% |
Simple repeats | 190,578 | 9,147,485 | 1.26% | |
Low_complexity | 27,793 | 1,401,146 | 0.19% |
