Table 1 Genomic analysis details of the isolates (CREC 3, CREC 4, CREC 5).

Nucleotide accession

JAYMDK000000000

JAZGVI000000000

JAZGVJ000000000

Sample type

Urine

Urine

Urine

ST

405

448

167

Phylogroup/Clones/Clades

D

B1

A

Age

48Y

68Y

70Y

Gender

Female

Male

Female

AMR genes

evgA, emrK, emrY, TolC, msbA, CTX-M-15, emrR, emrB, marA, mdtH, mdtG, H-NS, sul2, NDM-5, BRP(MBL), sul1, qacEdelta1, aadA2, dfrA12, rmtB, TEM-1, Mrx

mdtG, mdtH, H-NS, acrB, TolC, AcrE, evgA, PmrF, emrB, emrR, msbA, cpxA, marA, mdtE, CTX-M-15, dfrA12, aadA2, qacEdelta1, sul1, BRP(MBL), NDM-5, OXA-181, QnrS1, catA1, Mrx, TEM-1, rmtB

marA, Pmrf, mdtB, acrD, mdtN, mdtP, acrB, H-NS, emrA, emrB, TolC, cpxA, bacA, mdtG, mdtH, gadX, mdtF, mdtE, evgA, emrK, emrY, kdpE, NDM-5, BRP(MBL), sul1, qacEdelta1, aadA2, dfrA12, AcrF, rmtB, CMY-145

Antibiotic class the isolates are resistant to

Fluoroquinolone, Tetracycline, Beta lactam, Macrolide, Sulfonamide, Aminoglycoside

Tetracycline, Fluoroquinolone, Aminoglycoside, Beta lactam, Sulfonamide, Phenicol

Beta lactam, Aminoglycoside, Tetracycline, Fluoroquinolone, Sulfonamide

Virulence factors

fliC, shuA, udg, rfbA, rfbD, rfbB, KpsC

spaS

iucA, papH, iucC, wcaM, papG, iucB, iutA, papF, papD, iucD, yigF

Mobile genetic elements

bamA, clpA, clpB, dnaK, fhuE, gyrB, mukB, mutS, parC, polA, polB, recB, recC, recE_1, recG, rep, rnr, sbcC,topA,uvrA,uvrB,uvrD, virB4

Insertion sequence

IS630, IS110

IS110, IS256, IS4, IS630

IS200, IS605, IS630, IS110

Serotype

O102:H6

O188:H19

O101:H9

Plasmids

Col156, IncB/O/K/Z, IncFIA, IncFIB(pB171), IncFIC(FII), IncX4

Col(pHAD28), Col(pHAD28), ColKP3, ColRNAI, IncFIA, IncFIB(AP001918), IncFIB(H89-PhagePlasmid), IncX3

IncFIA, IncFIB(AP001918), IncFII, IncI(Gamma)