Extended Data Fig. 2: The inferred distribution of coalescence under the three-way admixture demography as function of input parameter Ne during ARG inference.
From: A likelihood-based framework for demographic inference from genealogical trees
For ARG inference based on (A) tsdate, (B) Relate, and (C) Relate with branch sampling, the left panels show the times of coalescences (that is, inner nodes) in ascending order in a genealogical tree of 1000 haplotypes simulated under the three-way admixture demography as in Fig. 2a. Different color bands show 2 times standard deviation across 50 independent simulations. Right panels show TMRCA in the true tree versus the reconstructed tree, using Ne = 10,000, which we use as default for all ARG inference in this study. Results from 50 independent simulations are pooled for display.
