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Nature Methods (5)
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Showing 1–13 of 13 results

Advanced filters: Author: Justin Kuczynski Clear advanced filters

Author Correction: SciPy 1.0: fundamental algorithms for scientific computing in Python

Pauli Virtanen
Ralf Gommers
Yoshiki Vázquez-Baeza
Amendments and CorrectionsOpen Access24 Feb 2020
Nature Methods

Volume: 17, P: 352
The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Pelin Yilmaz
Renzo Kottmann
Frank Oliver Glöckner
ResearchOpen Access15 Nov 2010
Nature Precedings

P: 1
The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Peter Sterk
Jeffrey Gordon
Doyle Ward
ResearchOpen Access16 Nov 2010
Nature Precedings

P: 1
Bayesian community-wide culture-independent microbial source tracking

SourceTracker finds the proportion and origin of contaminants in a given sample. Its database will prove useful in screening of metagenomic datasets for contaminants.

Dan Knights
Justin Kuczynski
Scott T Kelley
Research17 Jul 2011
Nature Methods

Volume: 8, P: 761-763
QIIME allows analysis of high-throughput community sequencing data

J Gregory Caporaso
Justin Kuczynski
Rob Knight
Correspondence11 Apr 2010
Nature Methods

Volume: 7, P: 335-336
Human gut microbiome viewed across age and geography

The human gut microbiome from a large cohort of more than 500 indivduals living on three continents with three distinct cultures is analysed, emphasizing the effect of host age, diet and environment on the composition and functional repertoire of fecal microbiota.

Tanya Yatsunenko
Federico E. Rey
Jeffrey I. Gordon
Research09 May 2012
Nature

Volume: 486, P: 222-227
Experimental and analytical tools for studying the human microbiome

Studies of the composition, dynamics and function of the human microbiome have taken off in the past two years thanks to the development of new sequencing technologies and advanced algorithms. This article provides a guide to the experimental and analytical best practices in this flourishing field.

Justin Kuczynski
Christian L. Lauber
Rob Knight
Reviews16 Dec 2011
Nature Reviews Genetics

Volume: 13, P: 47-58
Chemotaxis by natural populations of coral reef bacteria

Jessica Tout
Thomas C Jeffries
Justin R Seymour
Research23 Jan 2015
The ISME Journal

Volume: 9, P: 1764-1777
Microbial community resemblance methods differ in their ability to detect biologically relevant patterns

A comparison of ordination analysis methods used to reveal gradients or clusters in sequence data from microbial communities reveals which methods are best suited for which community structure at different sequencing depth.

Justin Kuczynski
Zongzhi Liu
Rob Knight
Research05 Sept 2010
Nature Methods

Volume: 7, P: 813-819
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

Pelin Yilmaz
Renzo Kottmann
Frank Oliver Glöckner
Reviews06 May 2011
Nature Biotechnology

Volume: 29, P: 415-420
An in vitro culture model to study the dynamics of colonic microbiota in Syrian golden hamsters and their susceptibility to infection with Clostridium difficile

Matthew Miezeiewski
Todd Schnaufer
Jon H Heinrichs
Research18 Jul 2014
The ISME Journal

Volume: 9, P: 321-332
SciPy 1.0: fundamental algorithms for scientific computing in Python

This Perspective describes the development and capabilities of SciPy 1.0, an open source scientific computing library for the Python programming language.

Pauli Virtanen
Ralf Gommers
Yoshiki Vázquez-Baeza
ReviewsOpen Access03 Feb 2020
Nature Methods

Volume: 17, P: 261-272
Supervised classification of microbiota mitigates mislabeling errors

Dan Knights
Justin Kuczynski
Scott T Kelley
Comments & Opinion07 Oct 2010
The ISME Journal

Volume: 5, P: 570-573