Fig. 6: Young SINE-associated genetic diversity of pigs.
From: Young SINEs in pig genomes impact gene regulation, genetic diversity, and complex traits
a The Pig TE polymorphism pipeline. The pipeline was constructed to identify both dimorphic SINEs and SNPs for each individual simultaneously. Ref+ refers to the insertion of a TE into the reference genome, whereas Ref- refers to the deletion of a TE from the reference genome. b Overviews of whole-genome re-sequencings in 374 individuals. c Venn diagram represents the distribution of dimorphic SINEs among different populations. d PCA plot displays the genetic relationship based on dimorphic SINEs among 374 individuals. e PCA plot displays the genetic relationship based on dimorphic SINEs among 364 individuals from modern pigs. f Phylogenetic tree based on dimorphic SINEs for 374 individuals. g Population structure based on dimorphic SINEs for 374 individuals when K was 3 and 10.
