Fig. 7: Potential candidate genes for young SINE-associated local adaptation.
From: Young SINEs in pig genomes impact gene regulation, genetic diversity, and complex traits
a The scatter diagram displays the 75 genes that may be associated with local adaptation. The x-axis represents the Fst, and the y-axis represents population frequency. b Chromatin accessibility and histone modifications for FRZB (chr15:88332856–88377275) and its dimorphic SINE (chr15:88377793). c Bar plot displays the population frequency of the dimorphic SINEs in the first exon of RUNX3. d Overviews of nine candidate genes under local adaptation. Bar charts indicate the population frequency of candidate dimorphic SINEs and the average TPM values of their corresponding candidate genes across tissues. e The scatter diagram displays the linkage disequilibrium between T-SNPs and dimorphic SINEs. The x-axis represents the chromosome, and the y-axis represents the r2 values.
