Fig. 4: Native and predicted DNA-protein binding residues in two representative proteins: human PAX3 homeodomain (PDB_ID: 3CMY) and phage 434 OR2/R1-69 complex (PDB_ID: 1RPE). | Communications Biology

Fig. 4: Native and predicted DNA-protein binding residues in two representative proteins: human PAX3 homeodomain (PDB_ID: 3CMY) and phage 434 OR2/R1-69 complex (PDB_ID: 1RPE).

From: TransBind allows precise detection of DNA-binding proteins and residues using language models and deep learning

Fig. 4

Binding residues are shown in red. a Native binding residues in 3CMY, b binding residues predicted by TransBind for 3CMY, c binding residues predicted by iProDNA for 3CMY, d–f native, TransBind-predicted, and iProDNA-predicted binding residues for 1RPE, respectively.

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